RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA1248424" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248424 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2903737 2903737 PRJNA1248424_P_NODE_56243_length_285_cov_1.452830_g50175_i0 PRJNA1248424 56243 285 1.45283 4.1405655 Metazoa 33208 Nematoda Nematoda 155 2.46e-44   NR VDK60685.1 6269 g50175 i0 76.6 59.2842105263158 94 22 98.9 0 283 2 128 221 VDK60685.1 unnamed protein product [Anisakis simplex] diamond 16896 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
17629603 17629603 PRJNA1248424_P_NODE_32834_length_460_cov_1.720930_g26779_i0 PRJNA1248424 32834 460 1.72093 7.916278 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 2.61e-8   NR KAI1697907.1 166010 g26779 i0 54.8 1.5 42 19 27.4 0 130 5 304 345 KAI1697907.1 RING-variant domain-containing protein [Ditylenchus destructor] diamond 690 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
27042026 27042026 PRJNA1248424_P_NODE_70782_length_250_cov_0.870056_g64713_i0 PRJNA1248424 70782 250 0.870056 2.17514 Globodera pallida 36090 Nematoda Nematoda 57 3.93e-7   NR KAI3416186.1 36090 g64713 i0 84.4 0.384 32 5 38.4 0 201 106 626 657 KAI3416186.1 hypothetical protein GPALN_005731 [Globodera pallida] diamond 96 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
27136386 27136386 PRJNA1248424_P_NODE_51702_length_300_cov_1.524229_g45634_i0 PRJNA1248424 51702 300 1.524229 4.572687 Ancylostoma ceylanicum 53326 Nematoda Nematoda 54.7 3.79e-6   NR EYB84735.1 53326 g45634 i0 47.7 0.44 44 23 44 0 144 13 197 240 EYB84735.1 hypothetical protein Y032_0311g2149 [Ancylostoma ceylanicum] diamond 132 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
27453046 27453046 PRJNA1248424_P_NODE_56443_length_285_cov_0.962264_g50375_i0 PRJNA1248424 56443 285 0.962264 2.7424524 Anisakis simplex 6269 Nematoda Nematoda 45.4 0.00592   NR VDK46973.1 6269 g50375 i0 58.1 0.326315789473684 31 13 32.6 0 274 182 153 183 VDK46973.1 unnamed protein product [Anisakis simplex] diamond 93 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
27484411 27484411 PRJNA1248424_P_NODE_50263_length_308_cov_1.229787_g44195_i0 PRJNA1248424 50263 308 1.229787 3.78774396 Mesorhabditis spiculigera 96644 Nematoda Nematoda 45.8 0.00661   NR CAJ0577906.1 96644 g44195 i0 54.1 1.26623376623377 37 15 34.1 1 98 202 290 326 CAJ0577906.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 390 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27628978 27628978 PRJNA1248424_P_NODE_44984_length_337_cov_1.196970_g38920_i0 PRJNA1248424 44984 337 1.19697 4.0337889 Trichinella 6333 Nematoda Nematoda 74.3 6.47e-13   NR KRY40850.1 6334 g38920 i0 35.1 11.8575667655786 111 72 98.8 0 335 3 207 317 KRY40850.1 hypothetical protein T01_9772, partial [Trichinella spiralis] diamond 3996 74.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
27800325 27800325 PRJNA1248424_P_NODE_8064_length_2045_cov_8.389452_g5501_i1 PRJNA1248424 8064 2045 8.389452 171.5642934 Diploscapter pachys 2018661 Nematoda Nematoda 67.8 1.02e-7   NR PAV61753.1 2018661 g5501 i1 53.7 1.20293398533007 54 25 7.9 0 1250 1411 307 360 PAV61753.1 hypothetical protein WR25_11164 [Diploscapter pachys] diamond 2460 67.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
27831675 27831675 PRJNA1248424_P_NODE_66164_length_259_cov_0.838710_g60095_i0 PRJNA1248424 66164 259 0.83871 2.1722589 Caenorhabditis briggsae 6238 Nematoda Nematoda 52 2.55e-5   NR XP_045099314.1 6238 g60095 i0 51.8 1.47104247104247 56 26 64.9 1 225 58 776 830 XP_045099314.1 Protein CBG25359 [Caenorhabditis briggsae] diamond 381 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
29189568 29189568 PRJNA1248424_P_NODE_72849_length_248_cov_0.880000_g66780_i0 PRJNA1248424 72849 248 0.88 2.1824 Globodera pallida 36090 Nematoda Nematoda 132 1.6e-33   NR KAI3418801.1 36090 g66780 i0 94.4 0.858870967741935 71 4 85.9 0 215 3 507 577 KAI3418801.1 hypothetical protein GPALN_007901 [Globodera pallida] diamond 213 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
29441713 29441713 PRJNA1248424_P_NODE_14970_length_1232_cov_2.653149_g10526_i0 PRJNA1248424 14970 1232 2.653149 32.68679568 Ancylostoma duodenale 51022 Nematoda Nematoda 47 0.0096   NR KIH56901.1 51022 g10526 i0 50 0.0974025974025974 40 20 9.7 0 137 256 4 43 KIH56901.1 zinc finger, C2H2 type, partial [Ancylostoma duodenale] diamond 120 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
29459749 29459749 PRJNA1248424_P_NODE_14130_length_1307_cov_1.914100_g9902_i0 PRJNA1248424 14130 1307 1.9141 25.017287 Metazoa 33208 Nematoda Nematoda 116 3.9e-24   NR KRY26037.1 6334 g9902 i0 47.1 9.10788064269319 121 64 27.8 0 549 187 372 492 KRY26037.1 Retrovirus-related Pol polyprotein from transposon 17.6, partial [Trichinella spiralis] diamond 11904 116 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
29473278 29473278 PRJNA1248424_P_NODE_37350_length_399_cov_2.690184_g31293_i0 PRJNA1248424 37350 399 2.690184 10.73383416 Trichuris suis 68888 Nematoda Nematoda 87.8 3.5e-17   NR KFD64585.1 68888 g31293 i0 51.1 3.30827067669173 88 42 65.4 1 135 395 240 327 KFD64585.1 hypothetical protein M514_23187 [Trichuris suis] diamond 1320 87.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30515933 30515933 PRJNA1248424_P_NODE_44973_length_337_cov_1.265152_g38909_i0 PRJNA1248424 44973 337 1.265152 4.26356224 Trichinella nelsoni 6336 Nematoda Nematoda 95.1 4.94e-20   NR KRX18751.1 6336 g38909 i0 45 0.970326409495549 109 58 95.3 1 325 5 997 1105 KRX18751.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trichinella nelsoni] diamond 327 95.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nelsoni
30705416 30705416 PRJNA1248424_P_NODE_69674_length_251_cov_0.865169_g63605_i0 PRJNA1248424 69674 251 0.865169 2.17157419 Meloidogyne enterolobii 390850 Nematoda Nematoda 52.8 7.7e-7   NR CAK5056828.1 390850 g63605 i0 52.4 0.50199203187251 42 20 50.2 0 246 121 20 61 CAK5056828.1 unnamed protein product [Meloidogyne enterolobii] diamond 126 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
30786784 30786784 PRJNA1248424_P_NODE_13274_length_1387_cov_33.039574_g9286_i0 PRJNA1248424 13274 1387 33.039574 458.25889138 Metazoa 33208 Nematoda Nematoda 62.8 1.95e-6   NR KAH7724542.1 70226 g9286 i0 63.5 6.49315068493151 52 19 11.2 0 206 361 98 149 KAH7724542.1 ENTH domain containing protein [Aphelenchoides avenae] diamond 9006 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
31165645 31165645 PRJNA1248424_P_NODE_58035_length_281_cov_0.942308_g51967_i0 PRJNA1248424 58035 281 0.942308 2.64788548 Rhabditida 6236 Nematoda Nematoda 72 1.64e-13   NR KAK6059175.1 27828 g51967 i0 42.7 6.33096085409253 75 37 73.7 1 281 75 45 119 KAK6059175.1 hypothetical protein COOONC_03202, partial [Cooperia oncophora] diamond 1779 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
31527462 31527462 PRJNA1248424_P_NODE_81236_length_233_cov_2.512500_g75167_i0 PRJNA1248424 81236 233 2.5125 5.854125 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 42.7 0.0287   NR WKX96869.1 27835 g75167 i0 38.1 0.811158798283262 63 35 76 1 220 44 132 194 WKX96869.1 hypothetical protein Q1695_012931 [Nippostrongylus brasiliensis] diamond 189 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
32065051 32065051 PRJNA1248424_P_NODE_36658_length_408_cov_0.916418_g30602_i0 PRJNA1248424 36658 408 0.916418 3.73898544 Trichuris suis 68888 Nematoda Nematoda 57.8 1.09e-6   NR KFD55864.1 68888 g30602 i0 60 0.661764705882353 45 16 31.6 1 129 1 148 192 KFD55864.1 hypothetical protein M513_03303 [Trichuris suis] diamond 270 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32128600 32128600 PRJNA1248424_P_NODE_47158_length_324_cov_0.920319_g41091_i0 PRJNA1248424 47158 324 0.920319 2.98183356 Wuchereria bancrofti 6293 Nematoda Nematoda 42.7 0.0169   NR EJW85190.1 6293 g41091 i0 47.9 0.444444444444444 48 24 43.5 1 183 43 41 88 EJW85190.1 hypothetical protein WUBG_03899 [Wuchereria bancrofti] diamond 144 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;