RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1248424" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27168205 27168205 PRJNA1248424_P_NODE_22942_length_728_cov_2.218321_g17145_i0 PRJNA1248424 22942 728 2.218321 16.14937688 Mycoplasmatales bacterium 2023991 Bacteria Bacteria 47.4 0.0384   NR HXN54441.1 2023991 g17145 i0 33.7 0.366758241758242 89 57 36.3 2 143 406 517 604 HXN54441.1 reverse transcriptase family protein [Mycoplasmatales bacterium] diamond 267 47.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales     Mycoplasmatales bacterium
31165647 31165647 PRJNA1248424_P_NODE_69015_length_251_cov_0.865169_g62946_i0 PRJNA1248424 69015 251 0.865169 2.17157419 FCB group 1783270 Bacteria Bacteria 142 1.04e-39   NR MDI4567808.1 2108 g62946 i0 90.1 1.93625498007968 81 8 96.8 0 247 5 145 225 MDI4567808.1 DNA sulfur modification protein DndD [Mycoplasma sp.] diamond 486 142 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;