RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1248424" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27073583 27073583 PRJNA1248424_P_NODE_66182_length_258_cov_3.654054_g60113_i0 PRJNA1248424 66182 258 3.654054 9.42745932 Methanobrevibacter sp. 66852 Archaea Archaea 89.4 2.58e-19   NR MBR1610281.1 66852 g60113 i0 59.7 1.74418604651163 77 31 89.5 0 257 27 135 211 MBR1610281.1 hypothetical protein [Methanobrevibacter sp.] diamond 450 89.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28147624 28147624 PRJNA1248424_P_NODE_53445_length_293_cov_0.990909_g47377_i0 PRJNA1248424 53445 293 0.990909 2.90336337 Methanosarcinales archaeon 2250255 Archaea Archaea 43.1 0.0386   NR TRZ88680.1 2250255 g47377 i0 38.7 0.63481228668942 62 34 62.5 3 242 60 43 101 TRZ88680.1 MAG: YkgJ family cysteine cluster protein [Methanosarcinales archaeon] diamond 186 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
32697167 32697167 PRJNA1248424_P_NODE_74320_length_246_cov_1.323699_g68251_i0 PRJNA1248424 74320 246 1.323699 3.25629954 Methanobrevibacter sp. 66852 Archaea Archaea 108 1.26e-26   NR MBR1610281.1 66852 g68251 i0 72.5 1.95121951219512 80 22 97.6 0 2 241 127 206 MBR1610281.1 hypothetical protein [Methanobrevibacter sp.] diamond 480 108 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;