RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1248424" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1248424 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30105138 30105138 PRJNA1248424_P_NODE_72312_length_248_cov_0.880000_g66243_i0 PRJNA1248424 72312 248 0.88 2.1824 Deinococcus proteolyticus 55148 Bacteria Bacteria 153 1.5799999999999994e-42   NR WP_013615087.1 55148 g66243 i0 90.2 0.991935483870968 82 8 99.2 0 247 2 141 222 WP_013615087.1 DUF4139 domain-containing protein [Deinococcus proteolyticus] diamond 246 153 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus
30453019 30453019 PRJNA1248424_P_NODE_53033_length_294_cov_6.045249_g46965_i0 PRJNA1248424 53033 294 6.045249 17.77303206 Trueperaceae bacterium 2026798 Bacteria Bacteria 47 0.00219   NR MBX3139675.1 2026798 g46965 i0 35.9 1.59183673469388 78 45 75.5 3 274 53 442 518 MBX3139675.1 hypothetical protein [Trueperaceae bacterium] diamond 468 47 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
31527453 31527453 PRJNA1248424_P_NODE_66036_length_259_cov_1.290323_g59967_i0 PRJNA1248424 66036 259 1.290323 3.34193657 Deinococcus radiophilus 32062 Bacteria Bacteria 132 9.1e-36   NR WP_229253386.1 32062 g59967 i0 75.6 2.90733590733591 86 21 99.6 0 259 2 50 135 WP_229253386.1 NAD(P)-dependent oxidoreductase [Deinococcus radiophilus] diamond 753 132 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;