RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1247234" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1247234 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30249895 30249895 PRJNA1247234_P_NODE_25532_length_245_cov_0.906977_g25376_i0 PRJNA1247234 25532 245 0.906977 2.22209365 root 1 Root_unresolved Root_unresolved 43.1 0.0288   NR XP_068361016.1 1144522 g25376 i0 35.4 1.21224489795918 65 42 79.6 0 205 11 1276 1340 XP_068361016.1 Adenylate and Guanylate cyclase catalytic domain containing protein [Tritrichomonas foetus] diamond 297 43.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31210535 31210535 PRJNA1247234_P_NODE_27215_length_243_cov_0.917647_g27059_i0 PRJNA1247234 27215 243 0.917647 2.22988221 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 88.2 3.86e-18   NR KAJ4459126.1 342808 g27059 i0 79.2 0.654320987654321 53 8 61.7 1 150 1 191 243 KAJ4459126.1 putative Adenosine deaminase [Paratrimastix pyriformis] diamond 159 88.2 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;