RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8004358 8004358 PRJNA1245487_P_NODE_15467_length_287_cov_1.387850_g15129_i0 PRJNA1245487 15467 287 1.38785 3.9831295 Cestoda 6199 Platyhelminthes Platyhelminthes 105 6.299999999999999e-26   NR VDL89772.1 70667 g15129 i0 60.2 7.3588850174216 88 33 92 1 1 264 124 209 VDL89772.1 unnamed protein product [Schistocephalus solidus] diamond 2112 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
18202758 18202758 PRJNA1245487_P_NODE_14155_length_303_cov_2.034783_g13817_i0 PRJNA1245487 14155 303 2.034783 6.16539249 Metazoa 33208 Platyhelminthes Platyhelminthes 112 2.42e-26   NR CAL5141758.1 300641 g13817 i0 56 5.94059405940594 100 44 99 0 302 3 517 616 CAL5141758.1 unnamed protein product [Calicophoron daubneyi] diamond 1800 112 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;