RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2902011 2902011 PRJNA1245487_P_NODE_3423_length_676_cov_2.436153_g3097_i0 PRJNA1245487 3423 676 2.436153 16.46839428 Meloidogyne graminicola 189291 Nematoda Nematoda 112 4.31e-26   NR AVZ46778.1 189291 g3097 i0 51.5 0.576923076923077 130 62 57.2 1 534 148 117 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 390 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
19477146 19477146 PRJNA1245487_P_NODE_15376_length_288_cov_1.600000_g15038_i0 PRJNA1245487 15376 288 1.6 4.608 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 1.75e-27   NR KAH7709244.1 70226 g15038 i0 60.6 8.86458333333333 94 37 97.9 0 3 284 731 824 KAH7709244.1 P-type ATPase [Aphelenchoides avenae] diamond 2553 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
27421472 27421472 PRJNA1245487_P_NODE_8263_length_425_cov_1.758523_g7925_i0 PRJNA1245487 8263 425 1.758523 7.47372275 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 156 8.269999999999999e-45   NR KAI6182696.1 293665 g7925 i0 64.8 4.29882352941176 122 43 86.1 0 366 1 15 136 KAI6182696.1 Ribosomal protein L1 domain containing protein [Aphelenchoides bicaudatus] diamond 1827 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;