RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26630437 26630437 PRJNA1245487_P_NODE_11141_length_353_cov_1.950000_g10803_i0 PRJNA1245487 11141 353 1.95 6.8835 Myxococcaceae bacterium 2484252 Bacteria Bacteria 89.4 6.25e-18   NR MER2566866.1 2484252 g10803 i0 43.6 0.994334277620397 117 53 96.9 3 3 344 808 914 MER2566866.1 thrombospondin type-1 domain-containing protein [Myxococcaceae bacterium] diamond 351 89.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27800283 27800283 PRJNA1245487_P_NODE_21204_length_245_cov_0.906977_g20866_i0 PRJNA1245487 21204 245 0.906977 2.22209365 Kofleriaceae bacterium 2212474 Bacteria Bacteria 42.7 0.0351   NR HUQ03225.1 2212474 g20866 i0 34.8 0.808163265306122 66 39 75.9 2 217 32 159 224 HUQ03225.1 class II aldolase/adducin family protein [Kofleriaceae bacterium] diamond 198 42.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28526507 28526507 PRJNA1245487_P_NODE_16187_length_279_cov_1.504854_g15849_i0 PRJNA1245487 16187 279 1.504854 4.19854266 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 82.4 6.59e-16   NR MBI5542280.1 2026735 g15849 i0 60.8 0.849462365591398 79 28 81.7 1 49 276 13 91 MBI5542280.1 TonB-dependent receptor [Deltaproteobacteria bacterium] diamond 237 82.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;