RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27989652 27989652 PRJNA1245487_P_NODE_19565_length_251_cov_0.876404_g19227_i0 PRJNA1245487 19565 251 0.876404 2.19977404 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 113 5.22e-27   NR XP_044553441.1 51637 g19227 i0 69.6 0.944223107569721 79 24 94.4 0 13 249 290 368 XP_044553441.1 uncharacterized protein C9374_014009 [Naegleria lovaniensis] diamond 237 113 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
28147600 28147600 PRJNA1245487_P_NODE_20205_length_249_cov_0.886364_g19867_i0 PRJNA1245487 20205 249 0.886364 2.20704636 Acrasis kona 1008807 Heterolobosea other_Eukaryota 95.1 1.48e-20   NR KAL0477447.1 1008807 g19867 i0 61.8 0.91566265060241 76 28 91.6 1 230 3 720 794 KAL0477447.1 COPI beta [Acrasis kona] diamond 228 95.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
30642138 30642138 PRJNA1245487_P_NODE_19073_length_253_cov_0.866667_g18735_i0 PRJNA1245487 19073 253 0.866667 2.19266751 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 61.2 1.35e-8   NR XP_002674268.1 5762 g18735 i0 40.3 0.853754940711462 72 34 77.1 3 4 198 2596 2665 XP_002674268.1 uncharacterized protein NAEGRDRAFT_70543 [Naegleria gruberi] diamond 216 61.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31812012 31812012 PRJNA1245487_P_NODE_18377_length_259_cov_1.258065_g18039_i0 PRJNA1245487 18377 259 1.258065 3.25838835 Acrasis kona 1008807 Heterolobosea other_Eukaryota 97.4 2.03e-21   NR KAL0491272.1 1008807 g18039 i0 65.5 2.003861003861 87 29 99.6 1 259 2 97 183 KAL0491272.1 enolase [Acrasis kona] diamond 519 97.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;