RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3602025 3602025 PRJNA1245487_P_NODE_4583_length_587_cov_1.463035_g4252_i0 PRJNA1245487 4583 587 1.463035 8.58801545 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 270 2.24e-86   NR CAG9318302.1 1481888 g4252 i0 72.5 13.0630323679727 182 48 93 1 40 585 1 180 CAG9318302.1 unnamed protein product [Blepharisma stoltei] diamond 7668 270 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
5454491 5454491 PRJNA1245487_P_NODE_12285_length_332_cov_1.343629_g11947_i0 PRJNA1245487 12285 332 1.343629 4.4608482800000004 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 197 1.1000000000000004e-59   NR CAG9318302.1 1481888 g11947 i0 81.8 1.98795180722892 110 20 99.4 0 330 1 1 110 CAG9318302.1 unnamed protein product [Blepharisma stoltei] diamond 660 197 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
26598467 26598467 PRJNA1245487_P_NODE_8781_length_409_cov_3.297619_g8443_i0 PRJNA1245487 8781 409 3.297619 13.48726171 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 63.2 3.07e-9   NR OMJ89086.1 5963 g8443 i0 40.5 0.579462102689487 79 47 57.9 0 247 11 5 83 OMJ89086.1 hypothetical protein SteCoe_8807 [Stentor coeruleus] diamond 237 63.2 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;