RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30059933 30059933 PRJNA1245487_P_NODE_19351_length_252_cov_0.871508_g19013_i0 PRJNA1245487 19351 252 0.871508 2.19620016 Chloroflexus 1107 Bacteria Bacteria 57.8 1.66e-7   NR WP_028456904.1 867845 g19013 i0 40.5 1.88095238095238 79 42 92.9 2 247 14 153 227 WP_028456904.1 DUF547 domain-containing protein [Chloroflexus sp. Y-396-1] diamond 474 57.8 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus sp. Y-396-1
30326879 30326879 PRJNA1245487_P_NODE_21992_length_242_cov_0.923077_g21654_i0 PRJNA1245487 21992 242 0.923077 2.23384634 Anaerolineae bacterium 2052143 Bacteria Bacteria 52.8 1.84e-6   NR MCW5848612.1 2052143 g21654 i0 59.6 0.644628099173554 52 21 64.5 0 1 156 73 124 MCW5848612.1 profilin [Anaerolineae bacterium] diamond 156 52.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31369394 31369394 PRJNA1245487_P_NODE_21816_length_243_cov_0.917647_g21478_i0 PRJNA1245487 21816 243 0.917647 2.22988221 Chloroflexota bacterium 2026724 Bacteria Bacteria 56.2 3e-8   NR MDQ5852066.1 2026724 g21478 i0 61.4 0.54320987654321 44 17 54.3 0 3 134 33 76 MDQ5852066.1 hypothetical protein [Chloroflexota bacterium] diamond 132 56.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;