RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6728991 6728991 PRJNA1245487_P_NODE_486_length_1476_cov_5.569494_g339_i0 PRJNA1245487 486 1476 5.569494 82.20573144 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 546 7.069999999999999e-190   NR MES1909605.1 1215613 g339 i0 74.1 3.65853658536585 352 91 71.5 0 1475 420 82 433 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 5400 548 0.996350364963504 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
6729001 6729001 PRJNA1245487_P_NODE_5966_length_511_cov_1.105023_g5630_i0 PRJNA1245487 5966 511 1.105023 5.64666753 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 251 3.77e-81   NR ADK26624.1 323453 g5630 i0 77.4 0.933463796477495 159 36 93.3 0 6 482 118 276 ADK26624.1 elongation factor 2, partial [Heteromita sp. PRA-74] diamond 477 251 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;