RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30073445 30073445 PRJNA1245487_P_NODE_17792_length_264_cov_1.460733_g17454_i0 PRJNA1245487 17792 264 1.460733 3.85633512 Bdellovibrio sp. 28201 Bacteria Bacteria 88.6 8.15e-20   NR HEY1079254.1 28201 g17454 i0 65 1.31818181818182 60 21 68.2 0 181 2 10 69 HEY1079254.1 lipocalin family protein [Bdellovibrio sp.] diamond 348 88.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
32760229 32760229 PRJNA1245487_P_NODE_13340_length_315_cov_1.429752_g13002_i0 PRJNA1245487 13340 315 1.429752 4.5037188 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 51.2 8.51e-5   NR MFN8790750.1 2053517 g13002 i0 34.2 0.723809523809524 76 47 69.5 2 225 7 182 257 MFN8790750.1 site-specific integrase [Bdellovibrionales bacterium] diamond 228 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;