contig_metadata
11 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26756897 | 26756897 | PRJNA1245487_P_NODE_10701_length_362_cov_1.179931_g10363_i0 | PRJNA1245487 | 10701 | 362 | 1.179931 | 4.27135022 | Weissella cibaria | 137591 | Bacteria | Bacteria | 51.6 | 2.55e-5 | NR | WP_196777313.1 | 137591 | g10363 | i0 | 58.2 | 0.812154696132597 | 98 | 26 | 72.9 | 7 | 4 | 267 | 6 | 98 | WP_196777313.1 hypothetical protein, partial [Weissella cibaria] | diamond | 294 | 51.6 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria | ||
| 26946945 | 26946945 | PRJNA1245487_P_NODE_23342_length_211_cov_4.188406_g23004_i0 | PRJNA1245487 | 23342 | 211 | 4.188406 | 8.83753666 | Staphylococcus aureus | 1280 | Bacteria | Bacteria | 129 | 3.2099999999999997e-37 | NR | MDN9006640.1 | 1280 | g23004 | i0 | 100 | 0.995260663507109 | 70 | 0 | 99.5 | 0 | 211 | 2 | 6 | 75 | MDN9006640.1 hypothetical protein [Staphylococcus aureus] | diamond | 210 | 129 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 26978630 | 26978630 | PRJNA1245487_P_NODE_12742_length_325_cov_0.821429_g12404_i0 | PRJNA1245487 | 12742 | 325 | 0.821429 | 2.66964425 | uncultured Gemmiger sp. | 1623490 | Bacteria | Bacteria | 45.1 | 0.0138 | NR | WP_294500257.1 | 1623490 | g12404 | i0 | 52.1 | 0.443076923076923 | 48 | 22 | 44.3 | 1 | 121 | 264 | 57 | 103 | WP_294500257.1 metallophosphoesterase [uncultured Gemmiger sp.] | diamond | 144 | 45.1 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Gemmiger | uncultured Gemmiger sp. | |||
| 27705784 | 27705784 | PRJNA1245487_P_NODE_8164_length_428_cov_2.053521_g7827_i0 | PRJNA1245487 | 8164 | 428 | 2.053521 | 8.78906988 | Heyndrickxia sporothermodurans | 46224 | Bacteria | Bacteria | 54.3 | 2.21e-5 | NR | WP_107981750.1 | 46224 | g7827 | i0 | 50 | 0.69392523364486 | 52 | 26 | 36.4 | 0 | 3 | 158 | 80 | 131 | WP_107981750.1 SPRY domain-containing protein [Heyndrickxia sporothermodurans] | diamond | 297 | 54.3 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Heyndrickxia | Heyndrickxia sporothermodurans | ||
| 28873567 | 28873567 | PRJNA1245487_P_NODE_17328_length_268_cov_1.317949_g16990_i0 | PRJNA1245487 | 17328 | 268 | 1.317949 | 3.53210332 | Veillonella sp. VA142 | 741834 | Bacteria | Bacteria | 180 | 1.3e-56 | NR | WP_240632606.1 | 741834 | g16990 | i0 | 95.5 | 1.9365671641791 | 88 | 4 | 98.5 | 0 | 3 | 266 | 15 | 102 | WP_240632606.1 hypothetical protein [Veillonella sp. VA142] | diamond | 519 | 180 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Veillonella | Veillonella sp. VA142 | ||
| 29094788 | 29094788 | PRJNA1245487_P_NODE_17468_length_267_cov_0.953608_g17130_i0 | PRJNA1245487 | 17468 | 267 | 0.953608 | 2.54613336 | Weissella cibaria | 137591 | Bacteria | Bacteria | 42.4 | 0.0309 | NR | WP_196777313.1 | 137591 | g17130 | i0 | 59.8 | 0.97752808988764 | 87 | 27 | 95.5 | 4 | 5 | 259 | 10 | 90 | WP_196777313.1 hypothetical protein, partial [Weissella cibaria] | diamond | 261 | 42.4 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria | ||
| 29094792 | 29094792 | PRJNA1245487_P_NODE_4968_length_562_cov_2.867076_g4635_i0 | PRJNA1245487 | 4968 | 562 | 2.867076 | 16.11296712 | Oscillospiraceae bacterium | 2485925 | Bacteria | Bacteria | 108 | 5.25e-25 | NR | MBO6041441.1 | 2485925 | g4635 | i0 | 41.9 | 1.52669039145907 | 148 | 80 | 76.9 | 3 | 1 | 432 | 40 | 185 | MBO6041441.1 transcriptional regulator [Oscillospiraceae bacterium] | diamond | 858 | 108 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium | |||
| 31053329 | 31053329 | PRJNA1245487_P_NODE_17015_length_271_cov_1.025253_g16677_i0 | PRJNA1245487 | 17015 | 271 | 1.025253 | 2.77843563 | Bacillus sp. WP8 | 756828 | Bacteria | Bacteria | 41.6 | 0.0225 | NR | WP_222121568.1 | 756828 | g16677 | i0 | 38.8 | 0.74169741697417 | 67 | 30 | 73.1 | 4 | 73 | 270 | 12 | 68 | WP_222121568.1 hypothetical protein, partial [Bacillus sp. WP8] | diamond | 201 | 41.6 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus sp. WP8 | ||
| 31970108 | 31970108 | PRJNA1245487_P_NODE_21478_length_244_cov_0.912281_g21140_i0 | PRJNA1245487 | 21478 | 244 | 0.912281 | 2.22596564 | Paenibacillus | 44249 | Bacteria | Bacteria | 165 | 8.559999999999999e-48 | NR | WP_024634287.1 | 44249 | g21140 | i0 | 100 | 0.995901639344262 | 81 | 0 | 99.6 | 0 | 2 | 244 | 227 | 307 | WP_024634287.1 MULTISPECIES: flavin monoamine oxidase family protein [Paenibacillus] | diamond | 243 | 165 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | |||
| 32318543 | 32318543 | PRJNA1245487_P_NODE_21439_length_244_cov_0.912281_g21101_i0 | PRJNA1245487 | 21439 | 244 | 0.912281 | 2.22596564 | Selenomonas sp. FOBRC9 | 936573 | Bacteria | Bacteria | 155 | 3.13e-44 | NR | WP_037351117.1 | 936573 | g21101 | i0 | 96.3 | 0.995901639344262 | 81 | 3 | 99.6 | 0 | 243 | 1 | 253 | 333 | WP_037351117.1 ABC transporter substrate-binding protein [Selenomonas sp. FOBRC9] | diamond | 243 | 155 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Selenomonadales | Selenomonadaceae | Selenomonas | Selenomonas sp. FOBRC9 | ||
| 32634025 | 32634025 | PRJNA1245487_P_NODE_16460_length_276_cov_1.443350_g16122_i0 | PRJNA1245487 | 16460 | 276 | 1.44335 | 3.983646 | Staphylococcus aureus | 1280 | Bacteria | Bacteria | 43.1 | 0.0256 | NR | WP_178137617.1 | 1280 | g16122 | i0 | 59.7 | 0.782608695652174 | 72 | 19 | 73.9 | 5 | 64 | 267 | 53 | 118 | WP_178137617.1 hypothetical protein, partial [Staphylococcus aureus] | diamond | 216 | 43.1 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;