RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27674005 27674005 PRJNA1245487_P_NODE_21704_length_243_cov_0.917647_g21366_i0 PRJNA1245487 21704 243 0.917647 2.22988221 Deinococcus aestuarii 2774531 Bacteria Bacteria 153 3.05e-45   NR WP_216328155.1 2774531 g21366 i0 100 0.975308641975309 79 0 97.5 0 241 5 29 107 WP_216328155.1 DUF4142 domain-containing protein [Deinococcus aestuarii] diamond 237 153 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aestuarii
30421506 30421506 PRJNA1245487_P_NODE_20373_length_248_cov_0.891429_g20035_i0 PRJNA1245487 20373 248 0.891429 2.21074392 Deinococcus sp. YIM 134 47478 Bacteria Bacteria 126 1.11e-35   NR WP_331823205.1 3118910 g20035 i0 95.8 0.870967741935484 72 3 87.1 0 216 1 1 72 WP_331823205.1 hypothetical protein [Deinococcus sp. YIM 134068] diamond 216 126 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus lichenicola
32065029 32065029 PRJNA1245487_P_NODE_20458_length_248_cov_0.891429_g20120_i0 PRJNA1245487 20458 248 0.891429 2.21074392 Thermus oshimai 56957 Bacteria Bacteria 42.7 0.00607   NR GAA6761585.1 56957 g20120 i0 55.3 0.459677419354839 38 16 44.8 1 144 34 29 66 GAA6761585.1 hypothetical protein Thermus77923_23180 [Thermus oshimai] diamond 114 42.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;