RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26743129 26743129 PRJNA1245487_P_NODE_20641_length_247_cov_0.896552_g20303_i0 PRJNA1245487 20641 247 0.896552 2.21448344 Bacteria 2 Bacteria Bacteria 121 1.24e-33   NR HTF56137.1 2026780 g20303 i0 75 7.51821862348178 76 19 92.3 0 13 240 1 76 HTF56137.1 DUF190 domain-containing protein [Planctomycetota bacterium] diamond 1857 122 0.991803278688525 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29789122 29789122 PRJNA1245487_P_NODE_1631_length_933_cov_4.201163_g1360_i0 PRJNA1245487 1631 933 4.201163 39.19685079 PVC group bacterium 2056642 Bacteria Bacteria 63.2 1.32e-8   NR MCP4648866.1 2056642 g1360 i0 45 0.321543408360129 100 55 32.2 0 483 782 1 100 MCP4648866.1 hypothetical protein [PVC group bacterium] diamond 300 63.2 1 Bacteria PVC group Pseudomonadati           PVC group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;