RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1245487" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11829754 11829754 PRJNA1245487_P_NODE_21130_length_245_cov_1.354651_g20792_i0 PRJNA1245487 21130 245 1.354651 3.31889495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 153 3.47e-46   NR XP_004339588.1 1257118 g20792 i0 90 1.95918367346939 80 8 98 0 243 4 25 104 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 480 153 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30673767 30673767 PRJNA1245487_P_NODE_20333_length_248_cov_1.337143_g19995_i0 PRJNA1245487 20333 248 1.337143 3.31611464 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 1.31e-9   NR XP_004338931.1 1257118 g19995 i0 47.6 1.98387096774194 82 39 94.4 3 7 240 129 210 XP_004338931.1 glutathione stransferase [Acanthamoeba castellanii str. Neff] diamond 492 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32350042 32350042 PRJNA1245487_P_NODE_17939_length_263_cov_1.173684_g17601_i0 PRJNA1245487 17939 263 1.173684 3.08678892 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.6 0.00206   NR XP_004338620.1 1257118 g17601 i0 38.2 0.627376425855513 55 34 62.7 0 167 3 56 110 XP_004338620.1 PQQ enzyme repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 165 46.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;