RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1242190" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1242190 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4178111 4178111 PRJNA1242190_S_NODE_3684_length_414_cov_6.932551_g3677_i0 PRJNA1242190 3684 414 6.932551 28.70076114 Trebouxia sp. C 2796353 Plants Plants 73.6 7.52e-14   NR KAL0042167.1 2905653 g3677 i0 55.7 1.42753623188406 61 26 43.5 1 45 224 5 65 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 591 73.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
4879128 4879128 PRJNA1242190_S_NODE_1904_length_513_cov_3.086364_g1897_i0 PRJNA1242190 1904 513 3.086364 15.83304732 Chlamydomonas eustigma 1157962 Plants Plants 158 1.47e-45   NR GAX77325.1 1157962 g1897 i0 70.6 0.637426900584795 109 32 63.7 0 61 387 96 204 GAX77325.1 hypothetical protein CEUSTIGMA_g4771.t1 [Chlamydomonas eustigma] diamond 327 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
27515949 27515949 PRJNA1242190_S_NODE_3043_length_444_cov_4.846361_g3036_i0 PRJNA1242190 3043 444 4.846361 21.51784284 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 85.5 1.21e-17   NR KAH7617709.1 1650286 g3036 i0 42.1 1.5472972972973 114 63 77 2 436 95 66 176 KAH7617709.1 putative 60S ribosomal protein L18a-2 [Chlorella desiccata (nom. nud.)] diamond 687 85.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
29491564 29491564 PRJNA1242190_S_NODE_6870_length_321_cov_3.145161_g6863_i0 PRJNA1242190 6870 321 3.145161 10.09596681 Chlamydomonadales 3042 Plants Plants 153 1.6e-44   NR KXZ41300.1 33097 g6863 i0 69.5 5.88785046728972 105 32 98.1 0 316 2 96 200 KXZ41300.1 hypothetical protein GPECTOR_569g606 [Gonium pectorale] diamond 1890 154 0.993506493506494 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
29712267 29712267 PRJNA1242190_S_NODE_1110_length_584_cov_4.289628_g1103_i0 PRJNA1242190 1110 584 4.289628 25.05142752 Eukaryota 2759 Plants Plants 132 1.7299999999999998e-35   NR XP_011396880.1 3075 g1103 i0 45.4 10.2585616438356 152 67 77.1 2 27 476 14 151 XP_011396880.1 40S ribosomal protein S19-1 [Auxenochlorella protothecoides] diamond 5991 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
31134031 31134031 PRJNA1242190_S_NODE_4975_length_366_cov_4.945392_g4968_i0 PRJNA1242190 4975 366 4.945392 18.10013472 Eukaryota 2759 Plants Plants 118 8.729999999999998e-31   NR ADB77798.1 34128 g4968 i0 55.4 30.2459016393443 101 45 82.8 0 366 64 77 177 ADB77798.1 40S ribosomal protein S9, partial [Cladophora coelothrix] diamond 11070 118 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Cladophora Cladophora coelothrix
31653648 31653648 PRJNA1242190_S_NODE_2877_length_452_cov_5.910290_g2870_i0 PRJNA1242190 2877 452 5.91029 26.7145108 Pedinophyceae sp. YPF-7 765719 Plants Plants 110 5.07e-28   NR CAG9460866.1 765719 g2870 i0 52.6 0.882743362831858 133 47 88.3 2 430 32 6 122 CAG9460866.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 399 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;