RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1242190" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1242190 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28052642 28052642 PRJNA1242190_S_NODE_3905_length_405_cov_2.545181_g3898_i0 PRJNA1242190 3905 405 2.545181 10.30798305 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 148 2.55e-38   NR MCA6491779.1 1869212 g3898 i0 55.3 0.911111111111111 123 53 91.1 2 404 36 709 829 MCA6491779.1 GTP-binding protein [Chitinophagaceae bacterium] diamond 369 148 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
28084191 28084191 PRJNA1242190_S_NODE_10065_length_272_cov_1.567839_g10058_i0 PRJNA1242190 10065 272 1.567839 4.26452208 Bacteroidota bacterium 1898104 Bacteria Bacteria 43.5 0.0289   NR MFN5323516.1 1898104 g10058 i0 32.5 0.882352941176471 80 50 83.8 1 253 26 600 679 MFN5323516.1 M1 family metallopeptidase [Bacteroidota bacterium] diamond 240 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28273593 28273593 PRJNA1242190_S_NODE_3906_length_405_cov_2.466867_g3899_i0 PRJNA1242190 3906 405 2.466867 9.99081135 Flavobacteriaceae bacterium 1871037 Bacteria Bacteria 101 1.0699999999999997e-23   NR MDP2061423.1 1871037 g3899 i0 51.7 1.74074074074074 118 38 84.4 2 404 63 115 217 MDP2061423.1 30S ribosomal protein S8e [Flavobacteriaceae bacterium] diamond 705 101 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae   Flavobacteriaceae bacterium
32508297 32508297 PRJNA1242190_S_NODE_12479_length_249_cov_0.886364_g12472_i0 PRJNA1242190 12479 249 0.886364 2.20704636 Saprospiraceae bacterium 2202734 Bacteria Bacteria 90.1 4.4300000000000005e-21   NR HMT54961.1 2202734 g12472 i0 64.7 1.63855421686747 68 24 81.9 0 245 42 51 118 HMT54961.1 hypothetical protein [Saprospiraceae bacterium] diamond 408 90.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;