RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1242190" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1242190 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16928143 16928143 PRJNA1242190_S_NODE_6574_length_328_cov_0.968627_g6567_i0 PRJNA1242190 6574 328 0.968627 3.17709656 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 144 2.52e-41   NR PRP75543.1 1890364 g6567 i0 70.5 1.02439024390244 112 29 99.7 3 328 2 46 156 PRP75543.1 hypothetical protein PROFUN_09029 [Planoprotostelium fungivorum] diamond 336 144 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
20752428 20752428 PRJNA1242190_S_NODE_3437_length_425_cov_6.832386_g3430_i0 PRJNA1242190 3437 425 6.832386 29.0376405 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 122 5.75e-32   NR KAF2071784.1 133409 g3430 i0 59.2 10.2635294117647 103 40 72 2 402 97 77 178 KAF2071784.1 hypothetical protein CYY_006891 [Polysphondylium violaceum] diamond 4362 122 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27073542 27073542 PRJNA1242190_S_NODE_8482_length_294_cov_1.502262_g8475_i0 PRJNA1242190 8482 294 1.502262 4.41665028 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 149 1.49e-42   NR PRP81789.1 1890364 g8475 i0 69.4 1 98 30 100 0 294 1 121 218 PRP81789.1 hypothetical protein PROFUN_10778 [Planoprotostelium fungivorum] diamond 294 149 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28526502 28526502 PRJNA1242190_S_NODE_13247_length_244_cov_2.561404_g13240_i0 PRJNA1242190 13247 244 2.561404 6.24982576 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 89 1.25e-20   NR KAH3756789.1 1580589 g13240 i0 78.1 0.786885245901639 64 14 78.7 0 53 244 4 67 KAH3756789.1 ribosomal protein L35 [Pelomyxa schiedti] diamond 192 89 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31242538 31242538 PRJNA1242190_S_NODE_8375_length_296_cov_1.049327_g8368_i0 PRJNA1242190 8375 296 1.049327 3.10600792 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 125 3.29e-34   NR PRP80753.1 1890364 g8368 i0 64.4 0.912162162162162 90 32 91.2 0 3 272 66 155 PRP80753.1 hypothetical protein PROFUN_11493 [Planoprotostelium fungivorum] diamond 270 125 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32096703 32096703 PRJNA1242190_S_NODE_11198_length_259_cov_1.145161_g11191_i0 PRJNA1242190 11198 259 1.145161 2.96596699 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 157 4.59e-46   NR PRP76932.1 1890364 g11191 i0 84.9 0.996138996138996 86 13 99.6 0 259 2 108 193 PRP76932.1 hypothetical protein PROFUN_06210 [Planoprotostelium fungivorum] diamond 258 157 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;