RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1241156" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1241156 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30452974 30452974 PRJNA1241156_S_NODE_57533_length_259_cov_0.990741_g57073_i0 PRJNA1241156 57533 259 0.990741 2.56601919 Caenorhabditis brenneri 135651 Nematoda Nematoda 42.7 0.0444   NR EGT37270.1 135651 g57073 i0 33.9 0.648648648648649 56 37 64.9 0 217 50 189 244 EGT37270.1 hypothetical protein CAEBREN_02106 [Caenorhabditis brenneri] diamond 168 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
31115959 31115959 PRJNA1241156_S_NODE_37375_length_309_cov_6.334586_g36915_i0 PRJNA1241156 37375 309 6.334586 19.57387074 Ancylostoma caninum 29170 Nematoda Nematoda 44.7 0.00298   NR RCN29921.1 29170 g36915 i0 48.7 0.378640776699029 39 20 37.9 0 158 42 32 70 RCN29921.1 hypothetical protein ANCCAN_24310 [Ancylostoma caninum] diamond 117 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
32065009 32065009 PRJNA1241156_S_NODE_59958_length_254_cov_1.014218_g59498_i0 PRJNA1241156 59958 254 1.014218 2.57611372 Angiostrongylus costaricensis 334426 Nematoda Nematoda 47.8 6.97e-4   NR VDM57341.1 334426 g59498 i0 62.2 0.803149606299213 45 9 53.1 1 137 3 104 140 VDM57341.1 unnamed protein product [Angiostrongylus costaricensis] diamond 204 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus costaricensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;