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contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA1241156" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1241156 · 28 ✖

analysis 1

  • diamond · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4176848 4176848 PRJNA1241156_S_NODE_21884_length_358_cov_3.806349_g21424_i0 PRJNA1241156 21884 358 3.806349 13.62672942 Cutibacterium acnes 1747 Bacteria Bacteria 75.1 1.46e-14   NR MES8497587.1 1747 g21424 i0 68.8 2.0111731843575398 48 15 40.2 0 181 38 2 49 MES8497587.1 hypothetical protein [Cutibacterium acnes] diamond 720 75.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
14379363 14379363 PRJNA1241156_S_NODE_62752_length_248_cov_1.565854_g62292_i0 PRJNA1241156 62752 248 1.565854 3.88331792 Eggerthellaceae bacterium 1972561 Bacteria Bacteria 82.8 1.34e-17   NR MEF2593734.1 1972561 g62292 i0 52.1 0.883064516129032 73 35 88.3 0 28 246 25 97 MEF2593734.1 hypothetical protein [Eggerthellaceae bacterium] diamond 219 82.8 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium
20751510 20751510 PRJNA1241156_S_NODE_41877_length_297_cov_4.602362_g41417_i0 PRJNA1241156 41877 297 4.602362 13.66901514 Microlunatus sp. Gsoil 973 2672569 Bacteria Bacteria 155 1.07e-45   NR WP_195909303.1 2672569 g41417 i0 82.7 0.98989898989899 98 17 99 0 296 3 3 100 WP_195909303.1 TetR/AcrR family transcriptional regulator [Microlunatus sp. Gsoil 973] diamond 294 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sp. Gsoil 973
26902009 26902009 PRJNA1241156_S_NODE_14221_length_393_cov_6.220000_g13761_i0 PRJNA1241156 14221 393 6.22 24.4446 Bacillati 1783272 Bacteria Bacteria 266 1.7499999999999994e-87   NR PYC99595.1 57043 g13761 i0 97.7 1.98473282442748 130 3 99.2 0 3 392 19 148 PYC99595.1 hypothetical protein B4U78_015940, partial [Microbacterium esteraromaticum] diamond 780 266 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum
26915350 26915350 PRJNA1241156_S_NODE_38782_length_305_cov_7.671756_g38322_i0 PRJNA1241156 38782 305 7.671756 23.3988558 Streptomyces sp. NPDC 1931 Bacteria Bacteria 41.2 0.0347   NR WP_389698468.1 3346425 g38322 i0 37.3 0.501639344262295 51 32 50.2 0 145 297 6 56 WP_389698468.1 hypothetical protein [Streptomyces sp. NPDC058289] diamond 153 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC058289
27502637 27502637 PRJNA1241156_S_NODE_64163_length_245_cov_2.000000_g63703_i0 PRJNA1241156 64163 245 2 4.9 Nocardia 1817 Bacteria Bacteria 43.1 0.0255   NR WP_354991800.1 3156725 g63703 i0 41.5 1.00408163265306 41 24 50.2 0 15 137 190 230 WP_354991800.1 hypothetical protein [Nocardia sp. NPDC005978] diamond 246 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. NPDC005978
27894727 27894727 PRJNA1241156_S_NODE_39005_length_305_cov_2.713740_g38545_i0 PRJNA1241156 39005 305 2.71374 8.276907 Actinomycetota bacterium 2900548 Bacteria Bacteria 45.8 0.00552   NR MDQ3943935.1 2900548 g38545 i0 41 0.6 61 36 60 0 301 119 157 217 MDQ3943935.1 PD-(D/E)XK nuclease family protein [Actinomycetota bacterium] diamond 183 45.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28052631 28052631 PRJNA1241156_S_NODE_64285_length_245_cov_1.267327_g63825_i0 PRJNA1241156 64285 245 1.267327 3.10495115 Gaiellaceae bacterium 2838783 Bacteria Bacteria 43.1 0.0143   NR HEX5172863.1 2838783 g63825 i0 43.9 0.502040816326531 41 23 50.2 0 230 108 20 60 HEX5172863.1 hypothetical protein [Gaiellaceae bacterium] diamond 123 43.1 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
28273581 28273581 PRJNA1241156_S_NODE_59666_length_254_cov_3.843602_g59206_i0 PRJNA1241156 59666 254 3.843602 9.76274908 Gaiellaceae bacterium 2838783 Bacteria Bacteria 42.7 0.0403   NR HKB93317.1 2838783 g59206 i0 41 1.38188976377953 39 23 46.1 0 63 179 190 228 HKB93317.1 amidohydrolase family protein [Gaiellaceae bacterium] diamond 351 42.7 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
28336872 28336872 PRJNA1241156_S_NODE_43626_length_292_cov_9.738956_g43166_i0 PRJNA1241156 43626 292 9.738956 28.43775152 Nocardiopsis sp. JB363 1434837 Bacteria Bacteria 43.1 0.0483   NR WP_087097397.1 1434837 g43166 i0 45 0.410958904109589 40 22 41.1 0 226 107 13 52 WP_087097397.1 glycosyltransferase [Nocardiopsis sp. JB363] diamond 120 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis sp. JB363
28368321 28368321 PRJNA1241156_S_NODE_51166_length_273_cov_3.169565_g50706_i0 PRJNA1241156 51166 273 3.169565 8.65291245 Cutibacterium acnes HL 1747 Bacteria Bacteria 41.2 0.0452   NR EFT29010.1 765096 g50706 i0 52.9 0.373626373626374 34 16 37.4 0 63 164 19 52 EFT29010.1 hypothetical protein HMPREF9594_01011 [Cutibacterium acnes HL005PA1] diamond 102 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28431672 28431672 PRJNA1241156_S_NODE_52526_length_270_cov_1.863436_g52066_i0 PRJNA1241156 52526 270 1.863436 5.0312772 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 43.5 0.0286   NR HEY2714582.1 1909295 g52066 i0 42.6 0.6 54 29 60 1 49 210 484 535 HEY2714582.1 pre-peptidase C-terminal domain-containing protein [Solirubrobacterales bacterium] diamond 162 43.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
28733931 28733931 PRJNA1241156_S_NODE_24827_length_347_cov_6.276316_g24367_i0 PRJNA1241156 24827 347 6.276316 21.77881652 Bacillati 1783272 Bacteria Bacteria 213 5.87e-67   NR PYC99595.1 57043 g24367 i0 100 1.98847262247839 115 0 99.4 0 2 346 143 257 PYC99595.1 hypothetical protein B4U78_015940, partial [Microbacterium esteraromaticum] diamond 690 213 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum
28796795 28796795 PRJNA1241156_S_NODE_17827_length_374_cov_10.531722_g17367_i0 PRJNA1241156 17827 374 10.531722 39.38864028 root 1 Root_unresolved Root_unresolved 50.1 2.33e-5   NR RNL48526.1 230658 g17367 i0 42.6 1.43582887700535 47 27 37.7 0 145 285 16 62 RNL48526.1 hypothetical protein DMP08_02685 [Paraeggerthella hongkongensis] diamond 537 50.1 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Paraeggerthella Paraeggerthella hongkongensis
28810124 28810124 PRJNA1241156_S_NODE_19408_length_368_cov_1.480000_g18948_i0 PRJNA1241156 19408 368 1.48 5.4464 Streptomyces sp. NPDC 1931 Bacteria Bacteria 46.2 0.00806   NR WP_383533505.1 3345840 g18948 i0 41.1 0.456521739130435 56 33 45.7 0 280 113 153 208 WP_383533505.1 bifunctional DNA primase/polymerase [Streptomyces sp. NPDC056500] diamond 168 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC056500
29094767 29094767 PRJNA1241156_S_NODE_13228_length_400_cov_1.462185_g12768_i0 PRJNA1241156 13228 400 1.462185 5.84874 Mycobacteroides immunogenum 83262 Bacteria Bacteria 142 3.08e-40   NR WP_054430228.1 83262 g12768 i0 91 0.585 78 7 58.5 0 234 1 1 78 WP_054430228.1 protein adenylyltransferase Fic [Mycobacteroides immunogenum] diamond 234 142 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides immunogenum
30168199 30168199 PRJNA1241156_S_NODE_33372_length_320_cov_6.061372_g32912_i0 PRJNA1241156 33372 320 6.061372 19.3963904 Mobiluncus mulieris 2052 Bacteria Bacteria 135 3.78e-37   NR WP_004014556.1 2052 g32912 i0 94.1 0.6375 68 4 63.8 0 1 204 185 252 WP_004014556.1 MIP/aquaporin family protein [Mobiluncus mulieris] diamond 204 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris
30199715 30199715 PRJNA1241156_S_NODE_64292_length_245_cov_1.089109_g63832_i0 PRJNA1241156 64292 245 1.089109 2.66831705 Actinobacteria bacterium HGW-Actinobacteria-9 2013654 Bacteria Bacteria 42.4 0.0484   NR PKQ10330.1 2013654 g63832 i0 41.9 0.759183673469388 62 32 72.2 2 39 215 169 229 PKQ10330.1 MAG: hypothetical protein CVT69_00380 [Actinobacteria bacterium HGW-Actinobacteria-9] diamond 186 42.4 1 Bacteria   Bacillati Actinomycetota         Actinobacteria bacterium HGW-Actinobacteria-9
30231533 30231533 PRJNA1241156_S_NODE_40532_length_301_cov_2.073643_g40072_i0 PRJNA1241156 40532 301 2.073643 6.24166543 Streptomyces sp. 1931 Bacteria Bacteria 62.4 7.66e-9   NR WP_415940400.1 2789263 g40072 i0 63.5 0.51827242524916906 52 16 51.8 1 138 293 137 185 WP_415940400.1 endonuclease/exonuclease/phosphatase family protein, partial [Streptomyces sp. 039-1] diamond 156 62.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 039-1
30249891 30249891 PRJNA1241156_S_NODE_67632_length_237_cov_2.103093_g67172_i0 PRJNA1241156 67632 237 2.103093 4.98433041 root 1 Root_unresolved Root_unresolved 62.8 2.45e-9   NR MES6284439.1 1747 g67172 i0 68.9 3.62025316455696 45 14 57 0 236 102 11 55 MES6284439.1 hypothetical protein [Cutibacterium acnes] diamond 858 63.2 0.993670886075949 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
30389930 30389930 PRJNA1241156_S_NODE_35893_length_313_cov_6.614815_g35433_i0 PRJNA1241156 35893 313 6.614815 20.70437095 Amycolatopsis balhimycina 208443 Bacteria Bacteria 42.4 0.0424   NR WP_245589723.1 208443 g35433 i0 41.7 0.460063897763578 48 25 43.1 1 148 282 54 101 WP_245589723.1 DUF5313 domain-containing protein [Amycolatopsis balhimycina] diamond 144 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis balhimycina
30610539 30610539 PRJNA1241156_S_NODE_58873_length_256_cov_1.990610_g58413_i0 PRJNA1241156 58873 256 1.99061 5.0959616 Lentzea sp. NBRC 1 56099 Bacteria Bacteria 45.4 0.00425   NR WP_285748251.1 3032205 g58413 i0 38.5 0.76171875 65 33 76.2 1 55 249 159 216 WP_285748251.1 class I SAM-dependent methyltransferase [Lentzea sp. NBRC 105346] diamond 195 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea sp. NBRC 105346
31970093 31970093 PRJNA1241156_S_NODE_47498_length_282_cov_4.071130_g47038_i0 PRJNA1241156 47498 282 4.07113 11.4805866 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 43.5 0.0304   NR HXZ64741.1 2339230 g47038 i0 36.7 0.957446808510638 90 28 80.9 5 275 48 179 253 HXZ64741.1 MFS transporter [Streptosporangiaceae bacterium] diamond 270 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
32033461 32033461 PRJNA1241156_S_NODE_49958_length_276_cov_3.386266_g49498_i0 PRJNA1241156 49958 276 3.386266 9.34609416 Microbacterium resistens 156977 Bacteria Bacteria 42.7 0.0399   NR WP_310021903.1 156977 g49498 i0 44.4 0.489130434782609 45 25 48.9 0 94 228 84 128 WP_310021903.1 biotin transporter BioY [Microbacterium resistens] diamond 135 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium resistens
32413248 32413248 PRJNA1241156_S_NODE_59479_length_255_cov_1.009434_g59019_i0 PRJNA1241156 59479 255 1.009434 2.5740567 Cutibacterium acnes 1747 Bacteria Bacteria 49.7 2.57e-5   NR MES7586305.1 1747 g59019 i0 66.7 0.388235294117647 33 9 36.5 1 123 215 26 58 MES7586305.1 hypothetical protein [Cutibacterium acnes] diamond 99 49.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
32445013 32445013 PRJNA1241156_S_NODE_51459_length_272_cov_5.445415_g50999_i0 PRJNA1241156 51459 272 5.445415 14.8115288 Cutibacterium acnes 1747 Bacteria Bacteria 45.8 9.68e-4   NR MES7586305.1 1747 g50999 i0 60.7 0.308823529411765 28 11 30.9 0 153 236 26 53 MES7586305.1 hypothetical protein [Cutibacterium acnes] diamond 84 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
32526517 32526517 PRJNA1241156_S_NODE_54739_length_265_cov_1.274775_g54279_i0 PRJNA1241156 54739 265 1.274775 3.37815375 Mycobacteriaceae 1762 Bacteria Bacteria 132 8.22e-37   NR MCV7085134.1 29314 g54279 i0 97.2 2.59245283018868 71 2 80.4 0 51 263 1 71 MCV7085134.1 helix-turn-helix transcriptional regulator [Mycolicibacter hiberniae] diamond 687 133 0.992481203007519 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter hiberniae
32539916 32539916 PRJNA1241156_S_NODE_66519_length_240_cov_4.086294_g66059_i0 PRJNA1241156 66519 240 4.086294 9.8071056 Rubrobacter sp. 2036010 Bacteria Bacteria 42.7 0.0107   NR MBD0253095.1 2036010 g66059 i0 36.1 0.7625 61 39 76.3 0 196 14 3 63 MBD0253095.1 YggT family protein [Rubrobacter sp.] diamond 183 42.7 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;