RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1241156" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1241156 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28336874 28336874 PRJNA1241156_S_NODE_52766_length_269_cov_4.261062_g52306_i0 PRJNA1241156 52766 269 4.261062 11.46225678 Amoebophrya sp. A12 88552 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.014   NR CAD7952072.1 2202890 g52306 i0 42.2 0.713754646840149 64 31 64.7 2 201 28 100 163 CAD7952072.1 unnamed protein product [Amoebophrya sp. A120] diamond 192 44.3 1 Eukaryota Sar     Dinophyceae Syndiniales Amoebophryaceae Amoebophrya Amoebophrya sp. A120
28368315 28368315 PRJNA1241156_S_NODE_23386_length_352_cov_6.686084_g22926_i0 PRJNA1241156 23386 352 6.686084 23.53501568 Tetraparma gracilis 2962635 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.0141   NR GMI41501.1 2962635 g22926 i0 38.2 0.46875 55 30 43.5 1 350 198 36 90 GMI41501.1 hypothetical protein TeGR_g2524, partial [Tetraparma gracilis] diamond 165 45.4 1 Eukaryota Sar     Bolidophyceae Parmales Triparmaceae Tetraparma Tetraparma gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;