RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240805 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30376485 30376485 PRJNA1240805_P_NODE_5352_length_197_cov_5.554054_g5303_i0 PRJNA1240805 5352 197 5.554054 10.94148638 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 46.6 5.79e-4   NR KAF1771875.1 29920 g5303 i0 53.7 4.55329949238579 54 25 82.2 0 2 163 18 71 KAF1771875.1 hypothetical protein GQ600_12051 [Phytophthora cactorum] diamond 897 46.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
32652028 32652028 PRJNA1240805_P_NODE_4940_length_205_cov_8.596154_g4891_i0 PRJNA1240805 4940 205 8.596154 17.6221157 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 80.1 1.57e-15   NR DAZ99178.1 4803 g4891 i0 83.7 9.70243902439024 43 7 62.9 0 183 55 973 1015 DAZ99178.1 TPA: hypothetical protein N0F65_008211 [Lagenidium giganteum] diamond 1989 80.5 0.995031055900621 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;