RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240805 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1624134 1624134 PRJNA1240805_P_NODE_6362_length_181_cov_8.522727_g6313_i0 PRJNA1240805 6362 181 8.522727 15.42613587 Polyangiales bacterium 3034171 Bacteria Bacteria 104 1.32e-25   NR MFO0606058.1 3034171 g6313 i0 88.1 0.977900552486188 59 7 97.8 0 179 3 100 158 MFO0606058.1 aldo/keto reductase [Polyangiales bacterium] diamond 177 104 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27894724 27894724 PRJNA1240805_P_NODE_7525_length_168_cov_3.210084_g7476_i0 PRJNA1240805 7525 168 3.210084 5.39294112 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 98.6 2.77e-22   NR MBM4264781.1 2026735 g7476 i0 85.2 0.964285714285714 54 8 96.4 0 163 2 49 102 MBM4264781.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 162 98.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27957969 27957969 PRJNA1240805_P_NODE_2385_length_307_cov_4.348837_g2336_i0 PRJNA1240805 2385 307 4.348837 13.35092959 Minicystis sp. 1971901 Bacteria Bacteria 44.7 0.0163   NR MEO7328454.1 1971901 g2336 i0 34.1 0.801302931596091 82 44 79.2 2 282 40 180 252 MEO7328454.1 hypothetical protein [Minicystis sp.] diamond 246 44.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
29126485 29126485 PRJNA1240805_P_NODE_3649_length_242_cov_3.113990_g3600_i0 PRJNA1240805 3649 242 3.11399 7.5358558 Kofleriaceae bacterium 2212474 Bacteria Bacteria 42 0.0296   NR HEY0990064.1 2212474 g3600 i0 36.5 0.78099173553719 63 39 78.1 1 13 201 64 125 HEY0990064.1 hypothetical protein [Kofleriaceae bacterium] diamond 189 42 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30010541 30010541 PRJNA1240805_P_NODE_2911_length_275_cov_9.800885_g2862_i0 PRJNA1240805 2911 275 9.800885 26.95243375 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.5 5.49e-9   NR MBT3716708.1 2026735 g2862 i0 39.7 2.74909090909091 68 41 74.2 0 252 49 11 78 MBT3716708.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 756 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31369375 31369375 PRJNA1240805_P_NODE_5076_length_203_cov_2.116883_g5027_i0 PRJNA1240805 5076 203 2.116883 4.29727249 Polyangiaceae bacterium 2268199 Bacteria Bacteria 78.2 7.11e-15   NR MBK9265096.1 2268199 g5027 i0 54.7 7.61083743842365 64 29 94.6 0 192 1 700 763 MBK9265096.1 DUF4215 domain-containing protein [Polyangiaceae bacterium] diamond 1545 78.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31400961 31400961 PRJNA1240805_P_NODE_4816_length_208_cov_9.238994_g4767_i0 PRJNA1240805 4816 208 9.238994 19.21710752 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 116 9.739999999999999e-30   NR MBM4304688.1 2026735 g4767 i0 69.4 1.03846153846154 72 19 99.5 1 208 2 236 307 MBM4304688.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 116 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;