RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240805 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27263302 27263302 PRJNA1240805_P_NODE_4103_length_227_cov_4.044944_g4054_i0 PRJNA1240805 4103 227 4.044944 9.18202288 Minisyncoccota bacterium 2053589 Bacteria Bacteria 139 1.4499999999999998e-37   NR HEY4479671.1 2053589 g4054 i0 84.9 0.964757709251101 73 11 96.5 0 226 8 243 315 HEY4479671.1 histidine--tRNA ligase [Candidatus Paceibacterota bacterium] diamond 219 139 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30421489 30421489 PRJNA1240805_P_NODE_7833_length_165_cov_3.775862_g7784_i0 PRJNA1240805 7833 165 3.775862 6.2301723 Minisyncoccota bacterium 2053589 Bacteria Bacteria 82.8 3.9e-18   NR HEX9608763.1 2053589 g7784 i0 76.9 0.945454545454545 52 12 94.5 0 1 156 53 104 HEX9608763.1 MgtC/SapB family protein [Candidatus Paceibacterota bacterium] diamond 156 82.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;