RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240805 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11828087 11828087 PRJNA1240805_P_NODE_2690_length_288_cov_11.757322_g2641_i0 PRJNA1240805 2690 288 11.757322 33.86108736 Metazoa 33208 Chordata Chordata 83.6 1.08e-18   NR XP_035696035.1 7739 g2641 i0 76.5 3.72916666666667 51 12 53.1 0 20 172 13 63 XP_035696035.1 60S ribosomal protein L38 [Branchiostoma floridae] diamond 1074 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
26915343 26915343 PRJNA1240805_P_NODE_6682_length_177_cov_3.289062_g6633_i0 PRJNA1240805 6682 177 3.289062 5.82163974 Hymenochirus boettgeri 247094 Chordata Chordata 42.4 0.021   NR KAG8441433.1 247094 g6633 i0 52.1 0.813559322033898 48 22 79.7 1 158 18 657 704 KAG8441433.1 hypothetical protein GDO86_006974 [Hymenochirus boettgeri] diamond 144 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
27642443 27642443 PRJNA1240805_P_NODE_5204_length_200_cov_3.913907_g5155_i0 PRJNA1240805 5204 200 3.913907 7.827814 Hypanus sabinus 79690 Chordata Chordata 46.6 9.43e-4   NR XP_059825715.1 79690 g5155 i0 40.3 1.89 62 29 85.5 4 179 9 1009 1067 XP_059825715.1 proprotein convertase subtilisin/kexin type 5b isoform X1 [Hypanus sabinus] diamond 378 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
28305246 28305246 PRJNA1240805_P_NODE_706_length_588_cov_26.949907_g660_i0 PRJNA1240805 706 588 26.949907 158.46545316 Delphinus delphis 9728 Chordata Chordata 46.2 0.0488   NR XP_059855366.2 9728 g660 i0 55.3 0.239795918367347 47 21 24 0 378 238 1 47 XP_059855366.2 zinc finger protein 568 isoform X1 [Delphinus delphis] diamond 141 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Delphinus Delphinus delphis
29491561 29491561 PRJNA1240805_P_NODE_8650_length_158_cov_2.449541_g8601_i0 PRJNA1240805 8650 158 2.449541 3.87027478 root 1 Root_unresolved Root_unresolved 107 5.54e-26   NR XP_036010302.1 10090 g8601 i0 100 13.2911392405063 50 0 94.9 0 152 3 39 88 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 2100 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30691908 30691908 PRJNA1240805_P_NODE_7273_length_171_cov_1.672131_g7224_i0 PRJNA1240805 7273 171 1.672131 2.85934401 Opisthokonta 33154 Chordata Chordata 60.5 5.83e-9   NR ERE74779.1 10029 g7224 i0 62.2 10.2631578947368 45 17 78.9 0 14 148 235 279 ERE74779.1 4-hydroxyphenylpyruvate dioxygenase-like protein, partial [Cricetulus griseus] diamond 1755 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;