RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240805 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27926392 27926392 PRJNA1240805_P_NODE_7965_length_164_cov_2.191304_g7916_i0 PRJNA1240805 7965 164 2.191304 3.59373856 Chlamydiales bacterium 2047757 Bacteria Bacteria 68.9 7.25e-12   NR MFI5333753.1 2047757 g7916 i0 66 0.914634146341463 50 16 91.5 1 9 158 184 232 MFI5333753.1 glycogen synthase [Chlamydiales bacterium] diamond 150 68.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28778786 28778786 PRJNA1240805_P_NODE_3247_length_258_cov_29.612440_g3198_i0 PRJNA1240805 3247 258 29.61244 76.4000952 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 144 6.72e-38   NR MBY0530222.1 2047756 g3198 i0 71.8 0.988372093023256 85 24 98.8 0 255 1 1023 1107 MBY0530222.1 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase [Rhabdochlamydiaceae bacterium] diamond 255 144 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;