RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240805 · 22 ✖

analysis 1

  • diamond · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10553522 10553522 PRJNA1240805_P_NODE_5729_length_191_cov_2.507042_g5680_i0 PRJNA1240805 5729 191 2.507042 4.78845022 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 102 1.2499999999999999e-23   NR HEY8278743.1 3034175 g5680 i0 84.1 0.989528795811518 63 10 99 0 190 2 56 118 HEY8278743.1 MFS transporter [Bdellovibrionota bacterium] diamond 189 102 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
22026200 22026200 PRJNA1240805_P_NODE_4158_length_225_cov_3.215909_g4109_i0 PRJNA1240805 4158 225 3.215909 7.23579525 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 101 5.249999999999999e-24   NR HMN68280.1 2053517 g4109 i0 77.3 2.64 66 15 88 0 200 3 191 256 HMN68280.1 cation transporter [Bdellovibrionales bacterium] diamond 594 101 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27389808 27389808 PRJNA1240805_P_NODE_823_length_554_cov_7.653465_g776_i0 PRJNA1240805 823 554 7.653465 42.4001961 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 135 6.72e-35   NR HXH76158.1 2081706 g776 i0 63 0.541516245487365 100 37 54.2 0 323 24 1 100 HXH76158.1 IS630 family transposase [Bacteriovoracaceae bacterium] diamond 300 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27800267 27800267 PRJNA1240805_P_NODE_6604_length_178_cov_3.062016_g6555_i0 PRJNA1240805 6604 178 3.062016 5.45038848 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 66.2 7.91e-11   NR MCB0368368.1 2053517 g6555 i0 56.3 0.808988764044944 48 21 80.9 0 34 177 119 166 MCB0368368.1 hypothetical protein [Bdellovibrionales bacterium] diamond 144 66.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28052625 28052625 PRJNA1240805_P_NODE_785_length_564_cov_6.617476_g738_i0 PRJNA1240805 785 564 6.617476 37.32256464 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 156 2.45e-44   NR MFL5783649.1 2081706 g738 i0 87.2 0.414893617021277 78 10 41.5 0 294 527 1 78 MFL5783649.1 DsbA family oxidoreductase [Bacteriovoracaceae bacterium] diamond 234 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28305245 28305245 PRJNA1240805_P_NODE_5926_length_188_cov_2.201439_g5877_i0 PRJNA1240805 5926 188 2.201439 4.13870532 Bdellovibrionales bacterium RBG_16_4 2053517 Bacteria Bacteria 55.1 7.84e-7   NR OFZ17887.1 1797388 g5877 i0 53.7 0.861702127659574 54 24 86.2 1 17 178 171 223 OFZ17887.1 MAG: hypothetical protein A2Z20_10635 [Bdellovibrionales bacterium RBG_16_40_8] diamond 162 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RBG_16_40_8
28778784 28778784 PRJNA1240805_P_NODE_1307_length_434_cov_12.654545_g1258_i0 PRJNA1240805 1307 434 12.654545 54.9207253 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 92.4 2.76e-21   NR NUM87850.1 2053517 g1258 i0 63.6 0.532258064516129 77 28 53.2 0 247 17 1 77 NUM87850.1 ATP synthase F0 subunit C [Bdellovibrionales bacterium] diamond 231 92.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29536670 29536670 PRJNA1240805_P_NODE_510_length_682_cov_6.799368_g473_i0 PRJNA1240805 510 682 6.799368 46.37168976 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 248 4.67e-74   NR MES2527348.1 3034175 g473 i0 82.6 0.633431085043988 144 25 63.3 0 677 246 565 708 MES2527348.1 hypothetical protein [Bdellovibrionota bacterium] diamond 432 248 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29631082 29631082 PRJNA1240805_P_NODE_1650_length_381_cov_2.605422_g1601_i0 PRJNA1240805 1650 381 2.605422 9.92665782 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 70.9 2.3e-11   NR MEW6058255.1 3034175 g1601 i0 52.8 0.417322834645669 53 25 41.7 0 20 178 395 447 MEW6058255.1 translocation protein TolB [Bdellovibrionota bacterium] diamond 159 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29631083 29631083 PRJNA1240805_P_NODE_1930_length_348_cov_2.675585_g1881_i0 PRJNA1240805 1930 348 2.675585 9.3110358 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 152 5.5e-41   NR MFL5785935.1 2081706 g1881 i0 72.9 0.827586206896552 96 26 82.8 0 348 61 438 533 MFL5785935.1 fatty acid CoA ligase family protein [Bacteriovoracaceae bacterium] diamond 288 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29997034 29997034 PRJNA1240805_P_NODE_3971_length_232_cov_1.021858_g3922_i0 PRJNA1240805 3971 232 1.021858 2.37071056 Bacteria 2 Bacteria Bacteria 112 1.63e-28   NR MFL5783183.1 2081706 g3922 i0 86.9 1.57758620689655 61 8 78.9 0 2 184 191 251 MFL5783183.1 type IV pilus twitching motility protein PilT [Bacteriovoracaceae bacterium] diamond 366 113 0.991150442477876 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
30136388 30136388 PRJNA1240805_P_NODE_432_length_729_cov_6.501471_g396_i0 PRJNA1240805 432 729 6.5014709999999996 47.39572359 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 78.6 4.26e-14   NR HEY8278972.1 3034175 g396 i0 31.3 0.670781893004115 163 100 62.6 4 655 200 1 162 HEY8278972.1 hypothetical protein [Bdellovibrionota bacterium] diamond 489 78.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30831795 30831795 PRJNA1240805_P_NODE_6114_length_185_cov_2.161765_g6065_i0 PRJNA1240805 6114 185 2.161765 3.99926525 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 95.1 6.09e-21   NR MES2529060.1 3034175 g6065 i0 81.5 0.875675675675676 54 10 87.6 0 182 21 1 54 MES2529060.1 sulfatase-like hydrolase/transferase [Bdellovibrionota bacterium] diamond 162 95.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31021477 31021477 PRJNA1240805_P_NODE_6955_length_174_cov_2.968000_g6906_i0 PRJNA1240805 6955 174 2.968 5.16432 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 48.9 5.38e-6   NR HLE11650.1 2081706 g6906 i0 59.5 1.27586206896552 37 15 63.8 0 172 62 18 54 HLE11650.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 222 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31115955 31115955 PRJNA1240805_P_NODE_1095_length_477_cov_6.750000_g1048_i0 PRJNA1240805 1095 477 6.75 32.1975 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 128 1.26e-32   NR MBX3020898.1 2053517 g1048 i0 62.8 0.540880503144654 86 32 54.1 0 197 454 27 112 MBX3020898.1 DUF4421 family protein [Bdellovibrionales bacterium] diamond 258 128 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31147391 31147391 PRJNA1240805_P_NODE_4195_length_224_cov_1.622857_g4146_i0 PRJNA1240805 4195 224 1.622857 3.63519968 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 60.1 2.22e-8   NR MES2528487.1 3034175 g4146 i0 89.2 0.495535714285714 37 4 49.6 0 113 223 557 593 MES2528487.1 VWA domain-containing protein [Bdellovibrionota bacterium] diamond 111 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31210511 31210511 PRJNA1240805_P_NODE_735_length_579_cov_5.794340_g688_i0 PRJNA1240805 735 579 5.79434 33.5492286 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 298 7.089999999999999e-96   NR MES2527780.1 3034175 g688 i0 82.1 0.953367875647668 184 33 95.3 0 556 5 326 509 MES2527780.1 murein biosynthesis integral membrane protein MurJ [Bdellovibrionota bacterium] diamond 552 298 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31653617 31653617 PRJNA1240805_P_NODE_1317_length_431_cov_11.945026_g1268_i0 PRJNA1240805 1317 431 11.945026 51.48306206 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 198 2.29e-61   NR HEX4922785.1 2053517 g1268 i0 70.4 0.939675174013921 135 40 94 0 407 3 44 178 HEX4922785.1 aminotransferase class IV [Bdellovibrionales bacterium] diamond 405 198 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31653621 31653621 PRJNA1240805_P_NODE_817_length_555_cov_23.980237_g770_i0 PRJNA1240805 817 555 23.980237 133.09031535 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 182 1.75e-50   NR HEY8279270.1 3034175 g770 i0 70 0.702702702702703 130 39 70.3 0 142 531 1 130 HEY8279270.1 ABC transporter ATP-binding protein [Bdellovibrionota bacterium] diamond 390 182 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32001778 32001778 PRJNA1240805_P_NODE_2878_length_278_cov_2.266376_g2829_i0 PRJNA1240805 2878 278 2.266376 6.30052528 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 53.5 8.84e-6   NR WP_015469527.1 453816 g2829 i0 66.7 0.420863309352518 39 13 42.1 0 126 10 45 83 WP_015469527.1 GldG family protein [Pseudobdellovibrio exovorus] diamond 117 53.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
32508280 32508280 PRJNA1240805_P_NODE_1199_length_455_cov_5.889163_g1151_i0 PRJNA1240805 1199 455 5.889163 26.79569165 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 250 2.7700000000000003e-79   NR MES2528493.1 3034175 g1151 i0 86.1 0.995604395604396 151 21 99.6 0 3 455 149 299 MES2528493.1 type II secretion system F family protein [Bdellovibrionota bacterium] diamond 453 250 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32697109 32697109 PRJNA1240805_P_NODE_3560_length_245_cov_3.357143_g3511_i0 PRJNA1240805 3560 245 3.357143 8.22500035 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 112 5.94e-28   NR MBS1985132.1 2053517 g3511 i0 65.8 0.96734693877551 79 27 96.7 0 3 239 172 250 MBS1985132.1 COX15/CtaA family protein [Bdellovibrionales bacterium] diamond 237 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;