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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA1240805" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240805 · 32 ✖

analysis 1

  • diamond · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349277 349277 PRJNA1240805_P_NODE_1381_length_422_cov_2.477212_g1332_i0 PRJNA1240805 1381 422 2.477212 10.45383464 Pseudonocardia parietis 570936 Bacteria Bacteria 120 5.7099999999999994e-30   NR WP_210025590.1 570936 g1332 i0 84.4 0.54739336492891 77 12 54.7 0 399 169 146 222 WP_210025590.1 arsenic resistance protein [Pseudonocardia parietis] diamond 231 120 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia parietis
1624137 1624137 PRJNA1240805_P_NODE_6442_length_180_cov_6.068702_g6393_i0 PRJNA1240805 6442 180 6.068702 10.9236636 Bacteria 2 Bacteria Bacteria 97.1 1.5000000000000002e-22   NR MCO4835694.1 2024894 g6393 i0 84.6 3.46666666666667 52 8 86.7 0 23 178 106 157 MCO4835694.1 SMP-30/gluconolactonase/LRE family protein [Acidimicrobiaceae bacterium] diamond 624 97.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
4878592 4878592 PRJNA1240805_P_NODE_4004_length_230_cov_12.640884_g3955_i0 PRJNA1240805 4004 230 12.640884 29.0740332 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 94 7.79e-22   NR HSP27650.1 2497619 g3955 i0 68.1 0.939130434782609 72 23 93.9 0 225 10 119 190 HSP27650.1 fasciclin domain-containing protein [Ilumatobacteraceae bacterium] diamond 216 94 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
9277739 9277739 PRJNA1240805_P_NODE_8_length_2692_cov_12.629966_g7_i0 PRJNA1240805 8 2692 12.629966 339.99868472000003 Mycobacterium sp. PSTR-4-N 2917745 Bacteria Bacteria 1195 0   NR WP_241207909.1 2917745 g7 i0 96.2 1.39970282317979 628 24 70 0 3 1886 215 842 WP_241207909.1 helicase-related protein [Mycobacterium sp. PSTR-4-N] diamond 3768 1195 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. PSTR-4-N
10553517 10553517 PRJNA1240805_P_NODE_5429_length_196_cov_2.265306_g5380_i0 PRJNA1240805 5429 196 2.265306 4.43999976 Nocardia 1817 Bacteria Bacteria 107 9.28e-26   NR WP_033246095.1 37328 g5380 i0 86 5.23469387755102 57 8 87.2 0 194 24 301 357 WP_033246095.1 hypothetical protein [Nocardia carnea] diamond 1026 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia carnea
11828109 11828109 PRJNA1240805_P_NODE_4390_length_218_cov_17.106509_g4341_i0 PRJNA1240805 4390 218 17.106509 37.29218962 Lawsonella sp. 2041415 Bacteria Bacteria 128 7.149999999999998e-35   NR WP_296238181.1 2041415 g4341 i0 96.9 0.894495412844037 65 2 89.4 0 196 2 67 131 WP_296238181.1 YebC/PmpR family DNA-binding transcriptional regulator [Lawsonella sp.] diamond 195 128 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella sp.
13103272 13103272 PRJNA1240805_P_NODE_4251_length_222_cov_7.150289_g4202_i0 PRJNA1240805 4251 222 7.150289 15.87364158 Corynebacterium otitidis 29321 Bacteria Bacteria 145 1.34e-38   NR WP_004600999.1 29321 g4202 i0 97.1 1.89189189189189 70 2 94.6 0 222 13 91 160 WP_004600999.1 acyltransferase family protein [Corynebacterium otitidis] diamond 420 145 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium otitidis
14378536 14378536 PRJNA1240805_P_NODE_8012_length_164_cov_0.886957_g7963_i0 PRJNA1240805 8012 164 0.886957 1.45460948 Brachybacterium timonense 2050896 Bacteria Bacteria 118 3.51e-29   NR WP_106506241.1 2050896 g7963 i0 100 0.98780487804878 54 0 98.8 0 163 2 16 69 WP_106506241.1 valine--tRNA ligase [Brachybacterium timonense] diamond 162 118 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium timonense
20750937 20750937 PRJNA1240805_P_NODE_2297_length_314_cov_3.796226_g2248_i0 PRJNA1240805 2297 314 3.796226 11.92014964 Rubrobacter sp. 2036010 Bacteria Bacteria 188 1.65e-58   NR MBA3793045.1 2036010 g2248 i0 84.6 1.98726114649682 104 16 99.4 0 314 3 8 111 MBA3793045.1 hypothetical protein [Rubrobacter sp.] diamond 624 188 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
22727404 22727404 PRJNA1240805_P_NODE_2098_length_332_cov_5.484099_g2049_i0 PRJNA1240805 2098 332 5.484099 18.20720868 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 123 3.63e-34   NR MCB0998229.1 2201156 g2049 i0 85.7 1.26506024096386 70 10 63.3 0 211 2 1 70 MCB0998229.1 toluene-4-monooxygenase system B family protein [Acidimicrobiales bacterium] diamond 420 123 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
23301825 23301825 PRJNA1240805_P_NODE_1559_length_393_cov_15.020349_g1510_i0 PRJNA1240805 1559 393 15.020349 59.02997157 Mycobacterium sp. DL592 2675524 Bacteria Bacteria 180 2.3599999999999996e-55   NR WP_167098114.1 2675524 g1510 i0 87.4 1.57251908396947 103 13 78.6 0 83 391 1 103 WP_167098114.1 TspO/MBR family protein [Mycobacterium sp. DL592] diamond 618 180 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. DL592
27673987 27673987 PRJNA1240805_P_NODE_6024_length_186_cov_4.656934_g5975_i0 PRJNA1240805 6024 186 4.656934 8.66189724 Actinomycetes bacterium 1883427 Bacteria Bacteria 59.3 1.02e-9   NR MFM7063960.1 1883427 g5975 i0 93.3 0.483870967741935 30 2 48.4 0 2 91 56 85 MFM7063960.1 ABC transporter permease subunit [Actinomycetes bacterium] diamond 90 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
27976016 27976016 PRJNA1240805_P_NODE_4645_length_212_cov_8.527607_g4596_i0 PRJNA1240805 4645 212 8.527607 18.07852684 Actinomycetes 1760 Bacteria Bacteria 97.1 1.38e-21   NR WP_005508893.1 43675 g4596 i0 69.8 13.372641509434 63 19 89.2 0 193 5 71 133 WP_005508893.1 dTDP-4-dehydrorhamnose reductase [Rothia mucilaginosa] diamond 2835 97.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
28021282 28021282 PRJNA1240805_P_NODE_6585_length_178_cov_5.232558_g6536_i0 PRJNA1240805 6585 178 5.232558 9.31395324 Pseudonocardia ammonioxydans 260086 Bacteria Bacteria 72 6.42e-13   NR WP_093343822.1 260086 g6536 i0 88.1 0.707865168539326 42 5 70.8 0 127 2 1 42 WP_093343822.1 sensor histidine kinase [Pseudonocardia ammonioxydans] diamond 126 72 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia ammonioxydans
28147581 28147581 PRJNA1240805_P_NODE_3805_length_237_cov_4.000000_g3756_i0 PRJNA1240805 3805 237 4 9.48 Mycobacteroides abscessus 36809 Bacteria Bacteria 40.8 0.0326   NR WP_005059146.1 36809 g3756 i0 36.5 1.31645569620253 52 33 65.8 0 211 56 1 52 WP_005059146.1 hypothetical protein [Mycobacteroides abscessus] diamond 312 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus
28147582 28147582 PRJNA1240805_P_NODE_8405_length_161_cov_0.910714_g8356_i0 PRJNA1240805 8405 161 0.910714 1.46624954 Arthrobacter russicus 172040 Bacteria Bacteria 68.6 1.84e-12   NR WP_309795644.1 172040 g8356 i0 100 0.726708074534162 39 0 72.7 0 43 159 143 181 WP_309795644.1 single-stranded DNA-binding protein [Arthrobacter russicus] diamond 117 68.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter russicus
28463327 28463327 PRJNA1240805_P_NODE_3086_length_266_cov_9.843318_g3037_i0 PRJNA1240805 3086 266 9.843318 26.18322588 Ilumatobacter sp. 1967498 Bacteria Bacteria 142 1.58e-38   NR HZB43511.1 1967498 g3037 i0 78.4 0.992481203007519 88 19 99.2 0 3 266 109 196 HZB43511.1 cobalamin-independent methionine synthase II family protein [Ilumatobacter sp.] diamond 264 142 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
28575932 28575932 PRJNA1240805_P_NODE_7647_length_167_cov_1.449153_g7598_i0 PRJNA1240805 7647 167 1.449153 2.42008551 Micrococcus 1269 Bacteria Bacteria 80.9 2.06e-17   NR WP_209279955.1 1273 g7598 i0 89.1 4.13173652694611 46 5 82.6 0 1 138 125 170 WP_209279955.1 LytR C-terminal domain-containing protein, partial [Micrococcus lylae] diamond 690 80.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lylae
28810122 28810122 PRJNA1240805_P_NODE_4408_length_218_cov_2.928994_g4359_i0 PRJNA1240805 4408 218 2.928994 6.38520692 Cutibacterium namnetense 1574624 Bacteria Bacteria 135 4.6e-35   NR WP_108773172.1 1574624 g4359 i0 100 0.908256880733945 66 0 90.8 0 198 1 498 563 WP_108773172.1 malto-oligosyltrehalose synthase [Cutibacterium namnetense] diamond 198 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium namnetense
29000295 29000295 PRJNA1240805_P_NODE_7668_length_167_cov_0.864407_g7619_i0 PRJNA1240805 7668 167 0.864407 1.44355969 Mycobacterium sp. 1785 Bacteria Bacteria 85.9 6.13e-18   NR MBI2700286.1 1785 g7619 i0 97.7 0.790419161676647 44 1 79 0 11 142 311 354 MBI2700286.1 MFS transporter [Mycobacterium sp.] diamond 132 85.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
29031722 29031722 PRJNA1240805_P_NODE_8248_length_162_cov_0.902655_g8199_i0 PRJNA1240805 8248 162 0.902655 1.4623011 Micrococcus lacusdianchii 2915940 Bacteria Bacteria 115 1.6499999999999998e-30   NR WP_248124612.1 2915940 g8199 i0 100 1 54 0 100 0 1 162 121 174 WP_248124612.1 hypothetical protein [Micrococcus lacusdianchii] diamond 162 115 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lacusdianchii
29662567 29662567 PRJNA1240805_P_NODE_3110_length_265_cov_3.055556_g3061_i0 PRJNA1240805 3110 265 3.055556 8.0972234 Lawsonella 1847725 Bacteria Bacteria 149 3.35e-42   NR WP_290595444.1 1847725 g3061 i0 100 0.815094339622642 72 0 81.5 0 216 1 1 72 WP_290595444.1 MULTISPECIES: GIY-YIG nuclease family protein [Lawsonella] diamond 216 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
29662568 29662568 PRJNA1240805_P_NODE_3490_length_248_cov_1.623116_g3441_i0 PRJNA1240805 3490 248 1.623116 4.02532768 Actinomycetospora callitridis 913944 Bacteria Bacteria 60.5 1.34e-8   NR WP_274193928.1 913944 g3441 i0 62.1 0.701612903225806 58 22 70.2 0 196 23 146 203 WP_274193928.1 hypothetical protein [Actinomycetospora callitridis] diamond 174 60.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora callitridis
30041926 30041926 PRJNA1240805_P_NODE_1931_length_348_cov_2.581940_g1882_i0 PRJNA1240805 1931 348 2.58194 8.9851512 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 73.9 8.53e-13   NR MDD2819422.1 2518612 g1882 i0 34.5 1.92241379310345 110 70 94.8 1 15 344 75 182 MDD2819422.1 hypothetical protein [Candidatus Nanopelagicales bacterium] diamond 669 73.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
30041927 30041927 PRJNA1240805_P_NODE_3651_length_242_cov_3.031088_g3602_i0 PRJNA1240805 3651 242 3.031088 7.33523296 Mycobacteriaceae bacterium 2448780 Bacteria Bacteria 140 1.43e-38   NR MEI6252201.1 2448780 g3602 i0 98.8 0.991735537190083 80 1 99.2 0 241 2 134 213 MEI6252201.1 EamA family transporter [Mycobacteriaceae bacterium] diamond 240 140 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae   Mycobacteriaceae bacterium
30105085 30105085 PRJNA1240805_P_NODE_772_length_568_cov_5.695568_g725_i0 PRJNA1240805 772 568 5.695568 32.35082624 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 103 1.89e-22   NR HTW00461.1 2339230 g725 i0 46.5 0.522887323943662 99 53 52.3 0 109 405 245 343 HTW00461.1 hypothetical protein [Streptosporangiaceae bacterium] diamond 297 103 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
30199711 30199711 PRJNA1240805_P_NODE_1312_length_432_cov_7.146214_g1263_i0 PRJNA1240805 1312 432 7.146214 30.87164448 Mycobacterium gordonae 1778 Bacteria Bacteria 263 3.3e-84   NR WP_065134831.1 1778 g1263 i0 99.2 0.916666666666667 132 1 91.7 0 412 17 11 142 WP_065134831.1 glycosyltransferase [Mycobacterium gordonae] diamond 396 263 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium gordonae
30515890 30515890 PRJNA1240805_P_NODE_7653_length_167_cov_0.864407_g7604_i0 PRJNA1240805 7653 167 0.864407 1.44355969 Lawsonella clevelandensis 1528099 Bacteria Bacteria 111 7.260000000000001e-27   NR WP_303678608.1 1528099 g7604 i0 100 0.988023952095808 55 0 98.8 0 1 165 112 166 WP_303678608.1 DEAD/DEAH box helicase [Lawsonella clevelandensis] diamond 165 111 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
30610535 30610535 PRJNA1240805_P_NODE_4893_length_206_cov_10.312102_g4844_i0 PRJNA1240805 4893 206 10.312102 21.24293012 Propionibacterium freudenreichii 1744 Bacteria Bacteria 45.1 0.00321   NR SCQ72472.1 1744 g4844 i0 55.1 0.713592233009709 49 19 68.4 2 168 28 81 128 SCQ72472.1 Hypothetical protein PFR_JS20-1_820 [Propionibacterium freudenreichii] diamond 147 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii
31495847 31495847 PRJNA1240805_P_NODE_8476_length_160_cov_2.396396_g8427_i0 PRJNA1240805 8476 160 2.396396 3.8342336 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 101 6.84e-25   NR MEI2728450.1 2518612 g8427 i0 100 0.975 52 0 97.5 0 158 3 15 66 MEI2728450.1 class I SAM-dependent methyltransferase [Candidatus Nanopelagicales bacterium] diamond 156 101 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
31748578 31748578 PRJNA1240805_P_NODE_7657_length_167_cov_0.864407_g7608_i0 PRJNA1240805 7657 167 0.864407 1.44355969 Populibacterium corticicola 1812826 Bacteria Bacteria 107 6.0100000000000005e-27   NR WP_377467158.1 1812826 g7608 i0 100 0.988023952095808 55 0 98.8 0 167 3 61 115 WP_377467158.1 S1 family peptidase [Populibacterium corticicola] diamond 165 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Jonesiaceae Populibacterium Populibacterium corticicola
32539910 32539910 PRJNA1240805_P_NODE_6639_length_178_cov_1.186047_g6590_i0 PRJNA1240805 6639 178 1.186047 2.11116366 Psychromicrobium lacuslunae 1618207 Bacteria Bacteria 56.6 1.33e-7   NR WP_045076286.1 1618207 g6590 i0 43.4 0.893258426966292 53 30 89.3 0 170 12 169 221 WP_045076286.1 SOS response-associated peptidase [Psychromicrobium lacuslunae] diamond 159 56.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Psychromicrobium Psychromicrobium lacuslunae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;