RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27768668 27768668 PRJNA1240804_P_NODE_122724_length_167_cov_0.881356_g122358_i0 PRJNA1240804 122724 167 0.881356 1.47186452 Rhodothermales bacterium 2306054 Bacteria Bacteria 59.7 2.92e-9   NR MEX0746625.1 2306054 g122358 i0 66.7 0.70059880239521 39 13 70.1 0 131 15 32 70 MEX0746625.1 FlgD immunoglobulin-like domain containing protein [Rhodothermales bacterium] diamond 117 59.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28305146 28305146 PRJNA1240804_P_NODE_129286_length_165_cov_1.620690_g128920_i0 PRJNA1240804 129286 165 1.62069 2.6741385 Rhodothermales bacterium 2306054 Bacteria Bacteria 54.7 7.74e-7   NR MEP0549053.1 2306054 g128920 i0 70.6 0.618181818181818 34 10 61.8 0 22 123 55 88 MEP0549053.1 hypothetical protein [Rhodothermales bacterium] diamond 102 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
30989866 30989866 PRJNA1240804_P_NODE_126034_length_166_cov_0.888889_g125668_i0 PRJNA1240804 126034 166 0.888889 1.47555574 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 60.5 5.31e-9   NR HEX8298998.1 2838334 g125668 i0 56.5 0.831325301204819 46 20 83.1 0 16 153 64 109 HEX8298998.1 hypothetical protein [Rubricoccaceae bacterium] diamond 138 60.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
32001667 32001667 PRJNA1240804_P_NODE_119418_length_167_cov_0.881356_g119052_i0 PRJNA1240804 119418 167 0.881356 1.47186452 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 58.9 1.96e-8   NR HYE95711.1 2838334 g119052 i0 64.7 0.916167664670659 51 18 91.6 0 165 13 209 259 HYE95711.1 hypothetical protein [Rubricoccaceae bacterium] diamond 153 58.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;