contig_metadata
5 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Oomycota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27344745 | 27344745 | PRJNA1240804_P_NODE_131643_length_165_cov_0.896552_g131277_i0 | PRJNA1240804 | 131643 | 165 | 0.896552 | 1.4793108 | Peronosporaceae | 4777 | SAR_Eukaryotes | SAR_Eukaryotes | 100 | 6.779999999999999e-23 | NR | XP_024578659.1 | 4781 | g131277 | i0 | 87.5 | 12.2181818181818 | 48 | 6 | 87.3 | 0 | 18 | 161 | 414 | 461 | XP_024578659.1 myosin-like protein [Plasmopara halstedii] | diamond | 2016 | 100 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Plasmopara | Plasmopara halstedii | ||
| 28702384 | 28702384 | PRJNA1240804_P_NODE_154347_length_152_cov_2.417476_g153981_i0 | PRJNA1240804 | 154347 | 152 | 2.417476 | 3.67456352 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 62.4 | 1.24e-9 | NR | KAE9033809.1 | 129364 | g153981 | i0 | 75 | 31.4605263157895 | 36 | 9 | 71.1 | 0 | 145 | 38 | 828 | 863 | KAE9033809.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Phytophthora rubi] | diamond | 4782 | 62.4 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora rubi | ||
| 31590649 | 31590649 | PRJNA1240804_P_NODE_136276_length_164_cov_0.904348_g135910_i0 | PRJNA1240804 | 136276 | 164 | 0.904348 | 1.48313072 | Phytophthora cactorum | 29920 | SAR_Eukaryotes | SAR_Eukaryotes | 45.1 | 0.00198 | NR | KAG2790828.1 | 29920 | g135910 | i0 | 56 | 0.914634146341463 | 50 | 19 | 86 | 1 | 15 | 155 | 72 | 121 | KAG2790828.1 hypothetical protein Pcac1_g329 [Phytophthora cactorum] | diamond | 150 | 45.1 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cactorum | ||
| 31956500 | 31956500 | PRJNA1240804_P_NODE_139497_length_164_cov_0.904348_g139131_i0 | PRJNA1240804 | 139497 | 164 | 0.904348 | 1.48313072 | Peronosporomycetes | 3418804 | SAR_Eukaryotes | SAR_Eukaryotes | 47.8 | 2.16e-4 | NR | XP_067815137.1 | 4779 | g139131 | i0 | 52 | 1.8109756097561 | 50 | 22 | 91.5 | 2 | 12 | 161 | 282 | 329 | XP_067815137.1 hypothetical protein CCR75_004047 [Bremia lactucae] | diamond | 297 | 48.1 | 0.993762993762994 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Bremia | Bremia lactucae | ||
| 32539806 | 32539806 | PRJNA1240804_P_NODE_126739_length_166_cov_0.888889_g126373_i0 | PRJNA1240804 | 126739 | 166 | 0.888889 | 1.47555574 | Hyaloperonospora brassicae | 162125 | SAR_Eukaryotes | SAR_Eukaryotes | 108 | 1.19e-25 | NR | CAI5715846.1 | 162125 | g126373 | i0 | 94 | 0.903614457831325 | 50 | 3 | 90.4 | 0 | 16 | 165 | 464 | 513 | CAI5715846.1 unnamed protein product [Hyaloperonospora brassicae] | diamond | 150 | 108 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Hyaloperonospora | Hyaloperonospora brassicae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;