RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27263186 27263186 PRJNA1240804_P_NODE_115323_length_168_cov_0.873950_g114957_i0 PRJNA1240804 115323 168 0.87395 1.468236 Fibrobacterota bacterium 2052160 Bacteria Bacteria 42.4 0.0184   NR MFH0920131.1 2052160 g114957 i0 54.3 0.625 35 16 62.5 0 50 154 494 528 MFH0920131.1 aldo/keto reductase [Fibrobacterota bacterium] diamond 105 42.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31590648 31590648 PRJNA1240804_P_NODE_135816_length_164_cov_1.026087_g135450_i0 PRJNA1240804 135816 164 1.026087 1.68278268 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 80.5 6.27e-16   NR MBN1982710.1 2663014 g135450 i0 85.7 3.60365853658537 49 7 89.6 0 17 163 420 468 MBN1982710.1 ATP-dependent RecD-like DNA helicase [Chitinivibrionales bacterium] diamond 591 80.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;