RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27294784 27294784 PRJNA1240804_P_NODE_70683_length_193_cov_1.326389_g70317_i0 PRJNA1240804 70683 193 1.326389 2.55993077 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 7.81e-6   NR XP_004352515.1 1257118 g70317 i0 52.3 1.44559585492228 44 21 68.4 0 172 41 278 321 XP_004352515.1 GTPaseactivator protein for Ras-like GTPase [Acanthamoeba castellanii str. Neff] diamond 279 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27705671 27705671 PRJNA1240804_P_NODE_133344_length_165_cov_0.896552_g132978_i0 PRJNA1240804 133344 165 0.896552 1.4793108 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 42.7 0.0129   NR NP_042541.1 5755 g132978 i0 52.8 1.2 36 17 65.5 0 113 6 25 60 NP_042541.1 H(+)-transporting ATPasesubunit 1 [Acanthamoeba castellanii] diamond 198 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28115709 28115709 PRJNA1240804_P_NODE_89765_length_180_cov_1.236641_g89399_i0 PRJNA1240804 89765 180 1.236641 2.2259538 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.7 0.0101   NR XP_004339586.1 1257118 g89399 i0 42.6 1.8 54 31 90 0 162 1 26 79 XP_004339586.1 uncharacterized protein ACA1_063370 [Acanthamoeba castellanii str. Neff] diamond 324 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;