RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29599433 29599433 PRJNA1240804_P_NODE_109830_length_169_cov_0.866667_g109464_i0 PRJNA1240804 109830 169 0.866667 1.46466723 Chlamydiia bacterium 2052156 Bacteria Bacteria 48.5 1.25e-4   NR MCH9612746.1 2052156 g109464 i0 68.8 1.24260355029586 32 10 56.8 0 154 59 270 301 MCH9612746.1 putative peptidoglycan glycosyltransferase FtsW [Chlamydiia bacterium] diamond 210 48.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30610481 30610481 PRJNA1240804_P_NODE_46473_length_225_cov_1.011364_g46107_i0 PRJNA1240804 46473 225 1.011364 2.275569 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 60.1 2.35e-8   NR WP_068468395.1 1414722 g46107 i0 45.8 2.94666666666667 59 32 78.7 0 1 177 460 518 WP_068468395.1 PKD-like domain-containing protein [Candidatus Protochlamydia phocaeensis] diamond 663 60.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
30642045 30642045 PRJNA1240804_P_NODE_149953_length_162_cov_0.920354_g149587_i0 PRJNA1240804 149953 162 0.920354 1.49097348 Parachlamydia sp. 2052048 Bacteria Bacteria 82.4 6.64e-17   NR MCE5317346.1 2052048 g149587 i0 73.5 2.72222222222222 49 13 90.7 0 149 3 58 106 MCE5317346.1 glutamyl-tRNA reductase [Parachlamydia sp.] diamond 441 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
30926720 30926720 PRJNA1240804_P_NODE_100134_length_173_cov_1.564516_g99768_i0 PRJNA1240804 100134 173 1.564516 2.70661268 Waddliaceae bacterium 2026802 Bacteria Bacteria 75.9 3e-14   NR HEY4832839.1 2026802 g99768 i0 79.2 0.832369942196532 48 10 83.2 0 20 163 109 156 HEY4832839.1 murein biosynthesis integral membrane protein MurJ [Waddliaceae bacterium] diamond 144 75.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
32255144 32255144 PRJNA1240804_P_NODE_100418_length_173_cov_1.435484_g100052_i0 PRJNA1240804 100418 173 1.435484 2.48338732 Chlamydiia bacterium 2052156 Bacteria Bacteria 52 7.72e-6   NR MCB1119066.1 2052156 g100052 i0 44.2 0.901734104046243 52 29 90.2 0 158 3 173 224 MCB1119066.1 polysaccharide export protein [Chlamydiia bacterium] diamond 156 52 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;