RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Candidatus Sumerlaeota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18198791 18198791 PRJNA1240804_P_NODE_123455_length_166_cov_1.641026_g123089_i0 PRJNA1240804 123455 166 1.641026 2.72410316 Candidatus Sumerlaeia bacterium 2715255 Bacteria Bacteria 73.6 2e-14   NR MBX3730183.1 2715255 g123089 i0 73.5 1.7710843373494 49 13 88.6 0 152 6 1 49 MBX3730183.1 peptide deformylase [Candidatus Sumerlaeia bacterium] diamond 294 73.6 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia       Candidatus Sumerlaeia bacterium
29757469 29757469 PRJNA1240804_P_NODE_148511_length_162_cov_0.920354_g148145_i0 PRJNA1240804 148511 162 0.920354 1.49097348 candidate division BRC1 bacterium HGW-BRC1-1 2013722 Bacteria Bacteria 53.5 1.86e-6   NR PKO17617.1 2013722 g148145 i0 67.6 0.62962962962963 34 11 63 0 161 60 323 356 PKO17617.1 MAG: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [candidate division BRC1 bacterium HGW-BRC1-1] diamond 102 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         candidate division BRC1 bacterium HGW-BRC1-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;