RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27642356 27642356 PRJNA1240804_P_NODE_129904_length_165_cov_1.206897_g129538_i0 PRJNA1240804 129904 165 1.206897 1.99138005 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 60.5 7.05e-9   NR RKW24914.1 2044595 g129538 i0 96.4 0.509090909090909 28 1 50.9 0 157 74 510 537 RKW24914.1 MAG: hypothetical protein D8B45_01600 [Candidatus Altimarinota bacterium] diamond 84 60.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28431567 28431567 PRJNA1240804_P_NODE_116866_length_168_cov_0.873950_g116500_i0 PRJNA1240804 116866 168 0.87395 1.468236 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 54.7 8.1e-7   NR NRH20878.1 2044595 g116500 i0 61 0.732142857142857 41 16 73.2 0 137 15 282 322 NRH20878.1 delta-60 repeat domain-containing protein [Candidatus Altimarinota bacterium] diamond 123 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30123099 30123099 PRJNA1240804_P_NODE_109212_length_169_cov_0.866667_g108846_i0 PRJNA1240804 109212 169 0.866667 1.46466723 Pseudomonadati 3379134 Bacteria Bacteria 55.8 3.11e-7   NR MDD2907039.1 2044595 g108846 i0 58.7 2.5207100591716 46 19 81.7 0 15 152 174 219 MDD2907039.1 DNA cytosine methyltransferase [Candidatus Altimarinota bacterium] diamond 426 55.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;