RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29631042 29631042 PRJNA1240804_P_NODE_66590_length_197_cov_1.371622_g66224_i0 PRJNA1240804 66590 197 1.371622 2.70209534 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 102 1.35e-24   NR XP_029215743.1 94643 g66224 i0 75 1.82741116751269 60 15 91.4 0 15 194 191 250 XP_029215743.1 ribosomal protein RPS4 [Besnoitia besnoiti] diamond 360 102 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
30691886 30691886 PRJNA1240804_P_NODE_128913_length_165_cov_1.784483_g128547_i0 PRJNA1240804 128913 165 1.784483 2.94439695 root 1 Root_unresolved Root_unresolved 59.3 1.8e-8   NR XP_013249558.1 5801 g128547 i0 61.5 3.50909090909091 39 15 70.9 0 48 164 23 61 XP_013249558.1 5-aminolevulinic acid synthase, putative [Eimeria acervulina] diamond 579 59.7 0.993299832495812 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;