RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1240804 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358098 27358098 PRJNA1240804_P_NODE_115903_length_168_cov_0.873950_g115537_i0 PRJNA1240804 115903 168 0.87395 1.468236 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 84 8.29e-18   NR WP_021766145.1 712359 g115537 i0 91.1 0.803571428571429 45 4 80.4 0 148 14 141 185 WP_021766145.1 Cof-type HAD-IIB family hydrolase [Leptotrichia sp. oral taxon 215] diamond 135 84 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
28936714 28936714 PRJNA1240804_P_NODE_105748_length_170_cov_0.735537_g105382_i0 PRJNA1240804 105748 170 0.735537 1.2504129 Fusobacterium massiliense 1852365 Bacteria Bacteria 57 1.3e-7   NR WP_315522735.1 1852365 g105382 i0 72.7 0.776470588235294 44 10 74.1 1 33 158 1078 1121 WP_315522735.1 YadA-like family protein [Fusobacterium massiliense] diamond 132 57 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
29441561 29441561 PRJNA1240804_P_NODE_119750_length_167_cov_0.881356_g119384_i0 PRJNA1240804 119750 167 0.881356 1.47186452 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 60.1 9.63e-10   NR MBU9916984.1 2053555 g119384 i0 64.6 1.58083832335329 48 17 86.2 0 146 3 61 108 MBU9916984.1 hypothetical protein [Fusobacteriaceae bacterium] diamond 264 60.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;