RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1240804 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26598334 26598334 PRJNA1240804_P_NODE_131981_length_165_cov_0.896552_g131615_i0 PRJNA1240804 131981 165 0.896552 1.4793108 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 50.4 2.4e-5   NR MFU8806905.1 2740543 g131615 i0 55.3 2.01818181818182 38 16 69.1 1 39 152 123 159 MFU8806905.1 peptidoglycan DD-metalloendopeptidase family protein [Bradymonadaceae bacterium] diamond 333 50.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
30123128 30123128 PRJNA1240804_P_NODE_77792_length_188_cov_1.330935_g77426_i0 PRJNA1240804 77792 188 1.330935 2.5021578 Myxococcota 2818505 Bacteria Bacteria 47 5.64e-4   NR PKN53875.1 2013741 g77426 i0 59.5 1.18085106382979 37 15 59 0 14 124 356 392 PKN53875.1 MAG: DNA polymerase IV [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 222 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
31021370 31021370 PRJNA1240804_P_NODE_120995_length_167_cov_0.881356_g120629_i0 PRJNA1240804 120995 167 0.881356 1.47186452 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8 2013758 Bacteria Bacteria 68.2 1.15e-12   NR PKN07926.1 2013758 g120629 i0 72.1 0.772455089820359 43 12 77.2 0 17 145 34 76 PKN07926.1 MAG: hypothetical protein CVU73_11035 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8] diamond 129 68.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8
31780117 31780117 PRJNA1240804_P_NODE_128917_length_165_cov_1.784483_g128551_i0 PRJNA1240804 128917 165 1.784483 2.94439695 Deltaproteobacteria bacterium OttesenSCG-928-K17 2885211 Bacteria Bacteria 60.1 9.49e-9   NR MDL2259326.1 2885211 g128551 i0 57.1 2.61818181818182 49 21 89.1 0 5 151 32 80 MDL2259326.1 integrase arm-type DNA-binding domain-containing protein [Deltaproteobacteria bacterium OttesenSCG-928-K17] diamond 432 60.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium OttesenSCG-928-K17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;