RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1240804" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1240804 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27231468 27231468 PRJNA1240804_P_NODE_121823_length_167_cov_0.881356_g121457_i0 PRJNA1240804 121823 167 0.881356 1.47186452 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 76.6 6.74e-15   NR XP_012759689.1 1410327 g121457 i0 58.5 1.90419161676647 53 22 95.2 0 160 2 134 186 XP_012759689.1 hypothetical protein SAMD00019534_033430, partial [Acytostelium subglobosum LB1] diamond 318 76.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
27294784 27294784 PRJNA1240804_P_NODE_70683_length_193_cov_1.326389_g70317_i0 PRJNA1240804 70683 193 1.326389 2.55993077 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 7.81e-6   NR XP_004352515.1 1257118 g70317 i0 52.3 1.44559585492228 44 21 68.4 0 172 41 278 321 XP_004352515.1 GTPaseactivator protein for Ras-like GTPase [Acanthamoeba castellanii str. Neff] diamond 279 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27534029 27534029 PRJNA1240804_P_NODE_35823_length_248_cov_1.261307_g35457_i0 PRJNA1240804 35823 248 1.261307 3.12804136 Eumycetozoa 142796 Evosea other_Eukaryota 107 6.9899999999999995e-25   NR KAF2068463.1 133409 g35457 i0 64.6 4.05241935483871 82 26 95.6 2 239 3 380 461 KAF2068463.1 hypothetical protein CYY_010210 [Polysphondylium violaceum] diamond 1005 108 0.990740740740741 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27705671 27705671 PRJNA1240804_P_NODE_133344_length_165_cov_0.896552_g132978_i0 PRJNA1240804 133344 165 0.896552 1.4793108 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 42.7 0.0129   NR NP_042541.1 5755 g132978 i0 52.8 1.2 36 17 65.5 0 113 6 25 60 NP_042541.1 H(+)-transporting ATPasesubunit 1 [Acanthamoeba castellanii] diamond 198 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28115709 28115709 PRJNA1240804_P_NODE_89765_length_180_cov_1.236641_g89399_i0 PRJNA1240804 89765 180 1.236641 2.2259538 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.7 0.0101   NR XP_004339586.1 1257118 g89399 i0 42.6 1.8 54 31 90 0 162 1 26 79 XP_004339586.1 uncharacterized protein ACA1_063370 [Acanthamoeba castellanii str. Neff] diamond 324 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29189414 29189414 PRJNA1240804_P_NODE_138729_length_164_cov_0.904348_g138363_i0 PRJNA1240804 138729 164 0.904348 1.48313072 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 85.1 1.49e-17   NR PRP74144.1 1890364 g138363 i0 72 0.914634146341463 50 14 91.5 0 151 2 408 457 PRP74144.1 hypothetical protein PROFUN_06469 [Planoprotostelium fungivorum] diamond 150 85.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30295033 30295033 PRJNA1240804_P_NODE_120532_length_167_cov_0.881356_g120166_i0 PRJNA1240804 120532 167 0.881356 1.47186452 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 43.1 0.00969   NR PRP86601.1 1890364 g120166 i0 73.9 0.413173652694611 23 6 41.3 0 50 118 315 337 PRP86601.1 hypothetical protein PROFUN_05239 [Planoprotostelium fungivorum] diamond 69 43.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;