RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1237888" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237888 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29473115 29473115 PRJNA1237888_S_NODE_4970_length_185_cov_1.080882_g4920_i0 PRJNA1237888 4970 185 1.080882 1.9996317 Leviviridae sp. 2027243 Viruses Viruses 69.3 6.94e-12   NR URG15035.1 2027243 g4920 i0 54.8 1.00540540540541 62 27 98.9 1 2 184 78 139 URG15035.1 MAG: RNA dependent RNA polymerase, partial [Leviviridae sp.] diamond 186 69.3 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae   Leviviridae sp.
30010433 30010433 PRJNA1237888_S_NODE_6591_length_166_cov_0.888889_g6541_i0 PRJNA1237888 6591 166 0.888889 1.47555574 clirnapec virus 314 3368319 Viruses Viruses 62.8 1.13e-9   NR XII42380.1 3368319 g6541 i0 53.4 1.04819277108434 58 24 99.4 1 165 1 119 176 XII42380.1 MAG: capsid protein-like protein [clirnapec virus 314] diamond 174 62.8 1 Viruses               clirnapec virus 314
30231408 30231408 PRJNA1237888_S_NODE_6732_length_165_cov_1.637931_g6682_i0 PRJNA1237888 6732 165 1.637931 2.70258615 Picornaviridae sp. 1530251 Viruses Viruses 84.3 1.52e-17   NR URG14862.1 1530251 g6682 i0 78.7 0.854545454545454 47 10 85.5 0 2 142 59 105 URG14862.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 141 84.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;