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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA1237888" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237888 · 34 ✖

analysis 1

  • diamond · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26838728 26838728 PRJNA1237888_S_NODE_2341_length_265_cov_12.481481_g2291_i0 PRJNA1237888 2341 265 12.481481 33.07592465 root 1 Root_unresolved Root_unresolved 119 3.82e-33   NR XP_065450072.1 8478 g2291 i0 100 33.2490566037736 52 0 58.9 0 8 163 22 73 XP_065450072.1 small ribosomal subunit protein uS14 [Chrysemys picta bellii] diamond 8811 119 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
27926269 27926269 PRJNA1237888_S_NODE_1285_length_355_cov_5.928105_g1235_i0 PRJNA1237888 1285 355 5.928105 21.04477275 Mesocricetus auratus 10036 Chordata Chordata 58.2 7.34e-9   NR XP_040592993.1 10036 g1235 i0 67.6 0.312676056338028 37 12 31.3 0 355 245 2 38 XP_040592993.1 humanin-like 8 [Mesocricetus auratus] diamond 111 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
27989500 27989500 PRJNA1237888_S_NODE_1525_length_333_cov_7.063380_g1475_i0 PRJNA1237888 1525 333 7.06338 23.5210554 Pristiophorus japonicus 55135 Chordata Chordata 206 4.4499999999999995e-66   NR XP_070721757.1 55135 g1475 i0 97.3 34.6306306306306 110 3 99.1 0 3 332 20 129 XP_070721757.1 small ribosomal subunit protein eS24 isoform X2 [Pristiophorus japonicus] diamond 11532 206 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
28102196 28102196 PRJNA1237888_S_NODE_1385_length_346_cov_2.855219_g1335_i0 PRJNA1237888 1385 346 2.855219 9.87905774 Metazoa 33208 Chordata Chordata 125 9.76e-34   NR KFP02737.1 9244 g1335 i0 98.4 37.5346820809249 61 1 52.9 0 344 162 136 196 KFP02737.1 Ribosome biogenesis protein NSA2, partial [Calypte anna] diamond 12987 126 0.992063492063492 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Trochilidae Calypte Calypte anna
28115578 28115578 PRJNA1237888_S_NODE_5605_length_175_cov_0.801587_g5555_i0 PRJNA1237888 5605 175 0.801587 1.40277725 Acomys russatus 60746 Chordata Chordata 58.5 3.22e-9   NR XP_051006790.1 60746 g5555 i0 84.4 49.9885714285714 32 5 54.9 0 173 78 59 90 XP_051006790.1 small nuclear ribonucleoprotein F-like [Acomys russatus] diamond 8748 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Acomys Acomys russatus
28386465 28386465 PRJNA1237888_S_NODE_2986_length_234_cov_3.043243_g2936_i0 PRJNA1237888 2986 234 3.043243 7.12118862 Chondrichthyes 7777 Chordata Chordata 120 4.14e-31   NR XP_059848313.1 79690 g2936 i0 100 25.5769230769231 57 0 73.1 0 232 62 253 309 XP_059848313.1 eukaryotic translation initiation factor 3 subunit G isoform X1 [Hypanus sabinus] diamond 5985 120 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
28778649 28778649 PRJNA1237888_S_NODE_2647_length_250_cov_1.960199_g2597_i0 PRJNA1237888 2647 250 1.960199 4.9004975 Ascaphus truei 8439 Chordata Chordata 61.6 3.75e-9   NR MEE6474620.1 8439 g2597 i0 97.2 13.392 36 1 43.2 0 1 108 185 220 MEE6474620.1 hypothetical protein [Ascaphus truei] diamond 3348 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
28891499 28891499 PRJNA1237888_S_NODE_6588_length_166_cov_0.888889_g6538_i0 PRJNA1237888 6588 166 0.888889 1.47555574 Chordata 7711 Chordata Chordata 73.2 1.49e-13   NR NP_001087972.1 8355 g6538 i0 100 30.8132530120482 31 0 56 0 165 73 283 313 NP_001087972.1 WD repeat-containing protein 82-A [Xenopus laevis] diamond 5115 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28986696 28986696 PRJNA1237888_S_NODE_4688_length_190_cov_1.666667_g4638_i0 PRJNA1237888 4688 190 1.666667 3.1666673 Chordata 7711 Chordata Chordata 134 9.32e-39   NR XP_038638181.1 7830 g4638 i0 100 122.352631578947 63 0 99.5 0 2 190 53 115 XP_038638181.1 enhancer of rudimentary homolog isoform X2 [Scyliorhinus canicula] diamond 23247 134 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
29018320 29018320 PRJNA1237888_S_NODE_4728_length_189_cov_3.178571_g4678_i0 PRJNA1237888 4728 189 3.178571 6.00749919 Metazoa 33208 Chordata Chordata 133 4.51e-38   NR AAS49549.1 7897 g4678 i0 100 125.952380952381 62 0 98.4 0 3 188 60 121 AAS49549.1 ribosomal protein L11, partial [Latimeria chalumnae] diamond 23805 133 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
29220982 29220982 PRJNA1237888_S_NODE_7569_length_159_cov_6.745455_g7519_i0 PRJNA1237888 7569 159 6.745455 10.72527345 Polypterus senegalus 55291 Chordata Chordata 101 2.84e-23   NR KAG2466518.1 55291 g7519 i0 96.2 8.83018867924528 52 2 98.1 0 3 158 240 291 KAG2466518.1 PLIN2 protein, partial [Polypterus senegalus] diamond 1404 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29568005 29568005 PRJNA1237888_S_NODE_3550_length_216_cov_2.155689_g3500_i0 PRJNA1237888 3550 216 2.155689 4.65628824 Manis pentadactyla 143292 Chordata Chordata 105 1.39e-26   NR KAI5282854.1 143292 g3500 i0 82.4 5.06944444444444 68 12 94.4 0 204 1 88 155 KAI5282854.1 Protein Transport Protein Sec61 Subunit Gamma [Manis pentadactyla] diamond 1095 105 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla
29743930 29743930 PRJNA1237888_S_NODE_5390_length_178_cov_1.434109_g5340_i0 PRJNA1237888 5390 178 1.434109 2.55271402 Chordata 7711 Chordata Chordata 107 8.7e-27   NR NP_001085788.1 8355 g5340 i0 98.3 24.438202247191 58 1 97.8 0 175 2 159 216 NP_001085788.1 proteasome subunit alpha 5 S homeolog [Xenopus laevis] diamond 4350 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29870507 29870507 PRJNA1237888_S_NODE_2411_length_261_cov_12.320755_g2361_i0 PRJNA1237888 2411 261 12.320755 32.15717055 Elapidae 8602 Chordata Chordata 47.8 7.6e-4   NR ETE60028.1 8665 g2361 i0 90 5.28735632183908 20 2 23 0 259 200 408 427 ETE60028.1 Elongation factor 1-gamma [Ophiophagus hannah] diamond 1380 48.1 0.993762993762994 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
30041797 30041797 PRJNA1237888_S_NODE_4951_length_185_cov_1.669118_g4901_i0 PRJNA1237888 4951 185 1.669118 3.0878683 Taeniopygia guttata 59729 Chordata Chordata 102 1.11e-26   NR ACH45870.1 59729 g4901 i0 96.7 1.97837837837838 61 2 98.9 0 183 1 7 67 ACH45870.1 putative ATPase H+ transporting V1 subunit G isoform 1 [Taeniopygia guttata] diamond 366 102 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
30059905 30059905 PRJNA1237888_S_NODE_2951_length_235_cov_9.032258_g2901_i0 PRJNA1237888 2951 235 9.032258 21.2258063 Chordata 7711 Chordata Chordata 154 2.06e-45   NR EMP40612.1 8469 g2901 i0 97.4 61.736170212766 78 2 99.6 0 2 235 126 203 EMP40612.1 40S ribosomal protein S9 [Chelonia mydas] diamond 14508 155 0.993548387096774 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
30091452 30091452 PRJNA1237888_S_NODE_5312_length_179_cov_1.523077_g5262_i0 PRJNA1237888 5312 179 1.523077 2.72630783 Metazoa 33208 Chordata Chordata 114 1.34e-27   NR CAB3264384.1 59560 g5262 i0 94.9 89.9832402234637 59 3 98.9 0 177 1 946 1004 CAB3264384.1 NAD(P) transhydrogenase, mitochondrial-like [Phallusia mammillata] diamond 16107 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30104942 30104942 PRJNA1237888_S_NODE_4412_length_196_cov_1.013605_g4362_i0 PRJNA1237888 4412 196 1.013605 1.9866658 Chaetura pelagica 8897 Chordata Chordata 63.5 8.3e-11   NR KFU84678.1 8897 g4362 i0 83.3 1.04081632653061 36 6 55.1 0 153 46 100 135 KFU84678.1 N-alpha-acetyltransferase 20, partial [Chaetura pelagica] diamond 204 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
30186318 30186318 PRJNA1237888_S_NODE_1152_length_371_cov_13.568323_g1102_i0 PRJNA1237888 1152 371 13.568323 50.33847833 Chordata 7711 Chordata Chordata 225 6.589999999999999e-72   NR RLW12314.1 44316 g1102 i0 99.2 30.533692722372 118 1 95.4 0 369 16 139 256 RLW12314.1 hypothetical protein DV515_00000735 [Chloebia gouldiae] diamond 11328 226 0.995575221238938 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Chloebia Chloebia gouldiae
30249864 30249864 PRJNA1237888_S_NODE_4872_length_186_cov_6.335766_g4822_i0 PRJNA1237888 4872 186 6.335766 11.78452476 Aves 8782 Chordata Chordata 127 1.23e-35   NR XP_035189451.1 8884 g4822 i0 100 72.8064516129032 61 0 98.4 0 185 3 3 63 XP_035189451.1 40S ribosomal protein S8 isoform X3 [Oxyura jamaicensis] diamond 13542 127 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Oxyura Oxyura jamaicensis
30389822 30389822 PRJNA1237888_S_NODE_5093_length_183_cov_0.902985_g5043_i0 PRJNA1237888 5093 183 0.902985 1.65246255 Mauremys reevesii 260615 Chordata Chordata 89.7 6.81e-22   NR XP_039380025.1 260615 g5043 i0 97.8 1.54098360655738 46 1 75.4 0 46 183 3 48 XP_039380025.1 histone H2A.V isoform X4 [Mauremys reevesii] diamond 282 89.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys reevesii
30597053 30597053 PRJNA1237888_S_NODE_3233_length_225_cov_16.062500_g3183_i0 PRJNA1237888 3233 225 16.0625 36.140625 root 1 Root_unresolved Root_unresolved 127 2.32e-35   NR KAK9406484.1 8729 g3183 i0 100 212.44 64 0 85.3 0 2 193 119 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 47799 127 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
30597054 30597054 PRJNA1237888_S_NODE_7833_length_153_cov_2.375000_g7783_i0 PRJNA1237888 7833 153 2.375 3.63375 Chordata 7711 Chordata Chordata 60.8 3.34e-9   NR XP_043932876.1 7888 g7783 i0 100 122.960784313725 28 0 54.9 0 152 69 259 286 XP_043932876.1 F-actin-capping protein subunit alpha-1 [Protopterus annectens] diamond 18813 60.8 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
30691880 30691880 PRJNA1237888_S_NODE_2953_length_235_cov_6.688172_g2903_i0 PRJNA1237888 2953 235 6.688172 15.7172042 Mammalia 40674 Chordata Chordata 127 9.52e-35   NR XP_027470126.2 9704 g2903 i0 93.7 47.1957446808511 63 4 80.4 0 189 1 61 123 XP_027470126.2 60S ribosomal protein L12, partial [Zalophus californianus] diamond 11091 128 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Zalophus Zalophus californianus
30849897 30849897 PRJNA1237888_S_NODE_2534_length_255_cov_7.995146_g2484_i0 PRJNA1237888 2534 255 7.995146 20.3876223 Metazoa 33208 Chordata Chordata 52.8 2.85e-6   NR XP_061413560.1 7753 g2484 i0 100 209.270588235294 28 0 32.9 0 3 86 113 140 XP_061413560.1 ATP synthase F(0) complex subunit C3, mitochondrial-like [Lethenteron reissneri] diamond 53364 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
31102552 31102552 PRJNA1237888_S_NODE_2975_length_235_cov_1.053763_g2925_i0 PRJNA1237888 2975 235 1.053763 2.47634305 Squamata 8509 Chordata Chordata 139 2.0599999999999993e-40   NR CAI5790668.1 74358 g2925 i0 98.5 42.3829787234043 65 1 83 0 39 233 71 135 CAI5790668.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Podarcis lilfordi] diamond 9960 139 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis lilfordi
31292248 31292248 PRJNA1237888_S_NODE_1875_length_300_cov_2.649402_g1825_i0 PRJNA1237888 1875 300 2.649402 7.948206 Chordata 7711 Chordata Chordata 175 1.0699999999999996e-52   NR XP_064408421.1 7897 g1825 i0 100 738.15 97 0 97 0 299 9 108 204 XP_064408421.1 nascent polypeptide-associated complex subunit alpha isoform X5 [Latimeria chalumnae] diamond 221445 175 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
31355742 31355742 PRJNA1237888_S_NODE_2636_length_250_cov_22.636816_g2586_i0 PRJNA1237888 2636 250 22.636816 56.59204 Chordata 7711 Chordata Chordata 143 1.7699999999999993e-41   NR KAK9411593.1 8729 g2586 i0 98.6 27.72 70 1 84 0 3 212 98 167 KAK9411593.1 40S ribosomal protein S12 [Crotalus adamanteus] diamond 6930 144 0.993055555555556 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
31355743 31355743 PRJNA1237888_S_NODE_4556_length_192_cov_7.692308_g4506_i0 PRJNA1237888 4556 192 7.692308 14.76923136 root 1 Root_unresolved Root_unresolved 130 1.39e-36   NR OCU00697.1 8355 g4506 i0 98.4 70.875 63 1 98.4 0 190 2 99 161 OCU00697.1 hypothetical protein XELAEV_18006476mg [Xenopus laevis] diamond 13608 130 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31640214 31640214 PRJNA1237888_S_NODE_5316_length_179_cov_1.415385_g5266_i0 PRJNA1237888 5316 179 1.415385 2.53353915 Chordata 7711 Chordata Chordata 122 1.16e-30   NR KAG2462347.1 55291 g5266 i0 98.3 27.6871508379888 59 1 98.9 0 179 3 420 478 KAG2462347.1 SAMD8 protein, partial [Polypterus senegalus] diamond 4956 122 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31748462 31748462 PRJNA1237888_S_NODE_1877_length_300_cov_2.442231_g1827_i0 PRJNA1237888 1877 300 2.442231 7.326693 Ranitomeya imitator 111125 Chordata Chordata 202 1.13e-62   NR CAJ0927128.1 111125 g1827 i0 98 12.87 99 2 99 0 298 2 115 213 CAJ0927128.1 unnamed protein product [Ranitomeya imitator] diamond 3861 202 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
32178272 32178272 PRJNA1237888_S_NODE_7198_length_163_cov_0.912281_g7148_i0 PRJNA1237888 7198 163 0.912281 1.48701803 Chordata 7711 Chordata Chordata 102 1.29e-26   NR OCU01219.1 8355 g7148 i0 100 85.840490797546 53 0 97.5 0 161 3 64 116 OCU01219.1 hypothetical protein XELAEV_18007009mg [Xenopus laevis] diamond 13992 102 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32696993 32696993 PRJNA1237888_S_NODE_2680_length_248_cov_4.728643_g2630_i0 PRJNA1237888 2680 248 4.728643 11.72703464 Polypterus senegalus 55291 Chordata Chordata 175 4.69e-53   NR KAG2455554.1 55291 g2630 i0 98.8 7.93548387096774 82 1 99.2 0 2 247 41 122 KAG2455554.1 RL10 protein, partial [Polypterus senegalus] diamond 1968 176 0.994318181818182 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32823075 32823075 PRJNA1237888_S_NODE_3860_length_208_cov_0.911950_g3810_i0 PRJNA1237888 3860 208 0.91195 1.896856 Polypterus senegalus 55291 Chordata Chordata 101 3.6e-23   NR MBN3292080.1 55291 g3810 i0 100 53.2932692307692 50 0 72.1 0 207 58 409 458 MBN3292080.1 SPF45 factor [Polypterus senegalus] diamond 11085 101 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;