RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1237888" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237888 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29189376 29189376 PRJNA1237888_S_NODE_5589_length_175_cov_1.238095_g5539_i0 PRJNA1237888 5589 175 1.238095 2.16666625 Sarocladium implicatum 1610689 Fungi Fungi 44.3 6.78e-4   NR KAH8175438.1 1610689 g5539 i0 74.1 0.462857142857143 27 7 46.3 0 96 16 55 81 KAH8175438.1 hypothetical protein LIA77_03856 [Sarocladium implicatum] diamond 81 44.3 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Sarocladiaceae Sarocladium Sarocladium implicatum
30041796 30041796 PRJNA1237888_S_NODE_3171_length_227_cov_2.893258_g3121_i0 PRJNA1237888 3171 227 2.893258 6.56769566 Aureobasidium melanogenum 46634 Fungi Fungi 67.4 5.11e-11   NR KAG9680159.1 46634 g3121 i0 86.5 0.977973568281938 37 5 48.9 0 198 88 61 97 KAG9680159.1 hypothetical protein KCU87_g307, partial [Aureobasidium melanogenum] diamond 222 67.4 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Dothideales Saccotheciaceae Aureobasidium Aureobasidium melanogenum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;