RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1237888" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237888 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26756749 26756749 PRJNA1237888_S_NODE_3301_length_223_cov_4.011494_g3251_i0 PRJNA1237888 3301 223 4.011494 8.94563162 Daphnia magna 35525 Arthropoda Arthropoda 42.4 0.039   NR KAK4022885.1 35525 g3251 i0 37.5 0.645739910313901 48 27 61.9 2 199 62 73 119 KAK4022885.1 hypothetical protein OUZ56_008329 [Daphnia magna] diamond 144 42.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Diplostraca Daphniidae Daphnia Daphnia magna
27326332 27326332 PRJNA1237888_S_NODE_1403_length_344_cov_5.406780_g1353_i0 PRJNA1237888 1403 344 5.40678 18.5993232 Parthenolecanium corni 536013 Arthropoda Arthropoda 50.1 3.23e-4   NR KAK7582082.1 536013 g1353 i0 43.5 4.86627906976744 62 35 54.1 0 83 268 559 620 KAK7582082.1 hypothetical protein V9T40_013527 [Parthenolecanium corni] diamond 1674 50.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Coccidae Parthenolecanium Parthenolecanium corni
28652505 28652505 PRJNA1237888_S_NODE_5027_length_184_cov_1.155556_g4977_i0 PRJNA1237888 5027 184 1.155556 2.12622304 Aphis glycines 307491 Arthropoda Arthropoda 114 7.47e-28   NR KAE9522127.1 307491 g4977 i0 95 0.978260869565217 60 3 97.8 0 182 3 606 665 KAE9522127.1 hypothetical protein AGLY_017471 [Aphis glycines] diamond 180 114 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Aphis Aphis glycines
29725703 29725703 PRJNA1237888_S_NODE_7830_length_153_cov_2.490385_g7780_i0 PRJNA1237888 7830 153 2.490385 3.81028905 Parthenolecanium corni 536013 Arthropoda Arthropoda 51.6 8.27e-6   NR KAK7588065.1 536013 g7780 i0 89.3 1.09803921568627 28 3 54.9 0 67 150 122 149 KAK7588065.1 hypothetical protein V9T40_009784 [Parthenolecanium corni] diamond 168 51.6 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Coccidae Parthenolecanium Parthenolecanium corni
29915648 29915648 PRJNA1237888_S_NODE_5431_length_177_cov_2.429688_g5381_i0 PRJNA1237888 5431 177 2.429688 4.30054776 Lasius niger 67767 Arthropoda Arthropoda 43.9 0.00564   NR KMQ86303.1 67767 g5381 i0 53.3 0.508474576271186 30 14 50.8 0 163 74 216 245 KMQ86303.1 copia protein [Lasius niger] diamond 90 43.9 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Formicidae Lasius Lasius niger
32885868 32885868 PRJNA1237888_S_NODE_1400_length_344_cov_8.630508_g1350_i0 PRJNA1237888 1400 344 8.630508 29.68894752 Penaeus vannamei 6689 Arthropoda Arthropoda 46.2 0.00681   NR ROT67460.1 6689 g1350 i0 48.9 0.802325581395349 92 44 78.5 2 72 341 87 177 ROT67460.1 hypothetical protein C7M84_014457 [Penaeus vannamei] diamond 276 46.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus vannamei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;