RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1237888" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1237888 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13100512 13100512 PRJNA1237888_S_NODE_6931_length_164_cov_1.356522_g6881_i0 PRJNA1237888 6931 164 1.356522 2.22469608 Chitinophagaceae 563835 Bacteria Bacteria 103 1.2999999999999998e-24   NR WP_227990906.1 661481 g6881 i0 88.9 24.4207317073171 54 6 98.8 0 3 164 162 215 WP_227990906.1 sensor histidine kinase [Flavisolibacter ginsenosidimutans] diamond 4005 103 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavisolibacter Flavisolibacter ginsenosidimutans
28368197 28368197 PRJNA1237888_S_NODE_6266_length_168_cov_0.873950_g6216_i0 PRJNA1237888 6266 168 0.87395 1.468236 Pedobacter quisquiliarum 1834438 Bacteria Bacteria 73.9 5.77e-16   NR WP_188627629.1 1834438 g6216 i0 100 0.678571428571429 38 0 67.9 0 167 54 11 48 WP_188627629.1 hypothetical protein [Pedobacter quisquiliarum] diamond 114 73.9 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter quisquiliarum
28715700 28715700 PRJNA1237888_S_NODE_5467_length_177_cov_1.210938_g5417_i0 PRJNA1237888 5467 177 1.210938 2.14336026 Pedobacter quisquiliarum 1834438 Bacteria Bacteria 41.6 0.00824   NR GGC73341.1 1834438 g5417 i0 81.5 0.457627118644068 27 5 45.8 0 80 160 1 27 GGC73341.1 hypothetical protein GCM10011387_28640 [Pedobacter quisquiliarum] diamond 81 41.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter quisquiliarum
30484258 30484258 PRJNA1237888_S_NODE_6473_length_167_cov_0.881356_g6423_i0 PRJNA1237888 6473 167 0.881356 1.47186452 Pedobacter nutrimenti 1241337 Bacteria Bacteria 120 3.49e-32   NR WP_110833474.1 1241337 g6423 i0 100 0.988023952095808 55 0 98.8 0 2 166 17 71 WP_110833474.1 alpha/beta fold hydrolase [Pedobacter nutrimenti] diamond 165 120 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter nutrimenti
31432241 31432241 PRJNA1237888_S_NODE_6256_length_168_cov_0.873950_g6206_i0 PRJNA1237888 6256 168 0.87395 1.468236 Pedobacter quisquiliarum 1834438 Bacteria Bacteria 107 6.43e-29   NR WP_188626019.1 1834438 g6206 i0 98.2 0.982142857142857 55 1 98.2 0 166 2 26 80 WP_188626019.1 hypothetical protein [Pedobacter quisquiliarum] diamond 165 107 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter quisquiliarum
32696994 32696994 PRJNA1237888_S_NODE_6040_length_169_cov_1.058333_g5990_i0 PRJNA1237888 6040 169 1.058333 1.78858277 Pedobacter insulae 414048 Bacteria Bacteria 43.5 0.00718   NR WP_090994298.1 414048 g5990 i0 47.8 1.81065088757396 46 24 81.7 0 168 31 94 139 WP_090994298.1 LytR/AlgR family response regulator transcription factor [Pedobacter insulae] diamond 306 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter insulae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;