RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1237347" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1237347 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11819149 11819149 PRJNA1237347_P_NODE_295210_length_337_cov_2.003788_g288637_i0 PRJNA1237347 295210 337 2.003788 6.75276556 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 201 1.68e-58   NR YP_003540848.1 5778 g288637 i0 91.9 0.98813056379822 111 9 98.8 0 3 335 131 241 YP_003540848.1 NADH dehydrogenase subunit 5 [Vermamoeba vermiformis] diamond 333 201 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23296601 23296601 PRJNA1237347_P_NODE_492099_length_249_cov_0.875000_g485526_i0 PRJNA1237347 492099 249 0.875 2.17875 Arcellinida 318493 Tubulinea other_Eukaryota 137 1.41e-38   NR AFX73089.1 497998 g485526 i0 71.1 2.98795180722892 83 24 100 0 249 1 20 102 AFX73089.1 elongation factor 2 alpha, partial [Arcella hemisphaerica] diamond 744 138 0.992753623188406 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
28733807 28733807 PRJNA1237347_P_NODE_221487_length_405_cov_2.024096_g214915_i0 PRJNA1237347 221487 405 2.024096 8.1975888 root 1 Root_unresolved Root_unresolved 159 4.05e-46   NR ABD46563.1 5778 g214915 i0 58.1 20.0518518518519 136 53 100 3 1 405 24 156 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 8121 160 0.99375 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30389450 30389450 PRJNA1237347_P_NODE_333453_length_312_cov_3.711297_g326880_i0 PRJNA1237347 333453 312 3.711297 11.57924664 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 1.24e-33   NR AAD37351.1 5775 g326880 i0 64.9 0.932692307692308 97 32 91.3 1 287 3 91 187 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 291 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31400268 31400268 PRJNA1237347_P_NODE_193896_length_442_cov_4.010840_g187324_i0 PRJNA1237347 193896 442 4.01084 17.7279128 Amoeba proteus 5775 Tubulinea other_Eukaryota 54.3 2.01e-5   NR AKN09692.1 5775 g187324 i0 32.2 0.970588235294118 143 84 95 5 21 440 1 133 AKN09692.1 Tom40 [Amoeba proteus] diamond 429 54.3 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32790890 32790890 PRJNA1237347_P_NODE_238400_length_386_cov_1.805112_g231827_i0 PRJNA1237347 238400 386 1.805112 6.96773232 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 238 1.3499999999999998e-73   NR YP_003540812.1 5778 g231827 i0 97.7 0.994818652849741 128 3 99.5 0 384 1 33 160 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 384 238 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;