RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1237347" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29283574 29283574 PRJNA1237347_P_NODE_450349_length_259_cov_1.413978_g443776_i0 PRJNA1237347 450349 259 1.413978 3.66220302 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 100 1.39e-22   NR YP_009136573.1 1194616 g443776 i0 90.7 0.625482625482625 54 5 62.5 0 163 2 1 54 YP_009136573.1 NADH dehydrogenase subunit 5 [Lepidodermella squamata] diamond 162 100 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
32191376 32191376 PRJNA1237347_P_NODE_431918_length_266_cov_2.388601_g425345_i0 PRJNA1237347 431918 266 2.388601 6.35367866 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 160 3.71e-46   NR YP_009136579.1 1194616 g425345 i0 95.5 0.992481203007519 88 4 99.2 0 265 2 164 251 YP_009136579.1 NADH dehydrogenase subunit 2 [Lepidodermella squamata] diamond 264 160 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;