RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1237347" and tax_phylum = "Candidatus Ryaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Ryaniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1237347 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30357804 30357804 PRJNA1237347_P_NODE_233132_length_392_cov_1.435737_g226560_i0 PRJNA1237347 233132 392 1.435737 5.62808904 Candidatus Ryanbacteria bacterium RIFCSPLOWO2_ 2518621 Bacteria Bacteria 61.2 1.64e-9   NR OGZ54385.1 1802128 g226560 i0 48.6 0.566326530612245 74 38 56.6 0 376 155 3 76 OGZ54385.1 MAG: hypothetical protein A3H64_02295 [Candidatus Ryanbacteria bacterium RIFCSPLOWO2_02_FULL_45_11c] diamond 222 61.2 1 Bacteria Bacteria candidate phyla   Candidatus Ryaniibacteriota         Candidatus Ryanbacteria bacterium RIFCSPLOWO2_02_FULL_45_11c

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;