RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1237347" and tax_phylum = "Candidatus Deferrimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Deferrimicrobiota · 2 ✖

bioproject 1

  • PRJNA1237347 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29915336 29915336 PRJNA1237347_P_NODE_357711_length_299_cov_1.362832_g351138_i0 PRJNA1237347 357711 299 1.362832 4.07486768 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 52.8 2.16e-5   NR HLP58204.1 3060586 g351138 i0 40.8 0.983277591973244 98 54 96.3 2 291 4 183 278 HLP58204.1 hypothetical protein [Candidatus Deferrimicrobium sp.] diamond 294 52.8 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.
31842679 31842679 PRJNA1237347_P_NODE_128057_length_580_cov_4.218935_g121532_i0 PRJNA1237347 128057 580 4.218935 24.469823 Candidatus Deferrimicrobium sp. 3060586 Bacteria Bacteria 48.5 0.00351   NR HUY01024.1 3060586 g121532 i0 35.4 0.796551724137931 79 41 35.7 2 273 479 52 130 HUY01024.1 rhomboid family intramembrane serine protease [Candidatus Deferrimicrobium sp.] diamond 462 48.5 1 Bacteria     Candidatus Deferrimicrobiota Candidatus Deferrimicrobia Candidatus Deferrimicrobiales Candidatus Deferrimicrobiaceae Candidatus Deferrimicrobium Candidatus Deferrimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;